Smag013790.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000041.1:4402498-4405128[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.019 16.2 2.4 1 23 325 347 325 347 0.97 2 12 0.0013 0.18 13.1 4.2 1 23 351 373 351 373 0.95 3 12 0.00028 0.037 15.3 4.1 1 23 378 400 378 400 0.96 4 12 6.7e-05 0.0088 17.2 2.1 1 23 452 474 452 474 0.97 5 12 0.0033 0.43 11.9 1.6 1 23 479 501 479 501 0.97 6 12 0.00037 0.049 14.9 2.2 1 23 550 572 550 572 0.98 7 12 0.00042 0.055 14.7 0.7 3 23 581 601 580 601 0.98 8 12 1.1e-06 0.00014 22.9 2.1 1 23 612 634 612 634 0.96 9 12 3.4e-05 0.0045 18.1 1.3 1 23 640 662 640 662 0.98 10 12 0.00017 0.023 15.9 0.7 1 23 668 690 668 690 0.98 11 12 5.2e-06 0.00068 20.7 2.0 1 23 696 718 696 718 0.96 12 12 9.2e-05 0.012 16.8 0.3 1 22 724 745 724 745 0.96
Sequence Information
- Coding Sequence
- ATGGCGATGAACTCAacctattttaatattccactCAACATGGACCGCGTCTGCAGAATATGTCTCACAGAAAGCACAAATATGTCTCCCATATTTTGCTCAGAACAAGAAGTCGATCATTTCTCAGATCTCCcacagaaaattcaaatgtgcGGCTCAATCGAGGTTCAGGAACAAGATGGCCTACCTTCcttaatttgcaataattgCATCTATAATGCTAGTGTTGCCCACGATTTTAGACAGCTTTGTCAGACTTCGGACGCTCGTTTGCgactttattataataaaccTGCTAGAAGTAATCTGATGGAAACCAGTACCCAGACAGAACCTCAAACTCGAATTGTGATATCAAAGAAAAATGCTGATCAACAAAATAGCTACTGCGTGAAGGAGGAACAGCACATTTTGCCAGATATTCATCAACCAACTGAAGCCTTTGTACAAGAAAACCCCATAGGCGAAAGTCCCATGGACATCCATGACCAAAAGATGTATGAATGCAACCTCCGATTCGAAGTGCCCAAGGAGACTGAAAGAATGACTGAAGATTTAGCAAATGCAATCCATGCAAATGCAATGAATGCAAATGCAATTAATACAAACGTTATTAACTCAAATGTAATGAATGCTaacataattaattcaaaCACAATACATTCAAATCTAGTACCAGAGAATACTCTGGCAATTCCATGTGCCGAGGAAATTTCAGCAGCGAATGTTGAGTTGAATGAAAGGAATAAAATCGACATTGGGAATAAGACTGATATTAACAACAGAGCAGAAGACTATCTTGGACAAGAATTGTTAAATGAGTGTTTAGAGGACCAGCAAACAACGCCTCCGAAAAGAAAATCGAATCGCAAAGTTAAATCCTTGCAGAATAAAACTACCTTCAGTGATGACGAAGTTGATGACGATTATTATGATCAGAGTAGCGACAGTCAAGGTTCTGAGGaaccgaaatttaaatgtaaagtATGTTTGAAACGGTACTCAACTCAGAAAGGACTGAAGAAACATTCCCTTGTgcatgataagaaacataattgcAATGTTTGTTTAAAGACTTTCTGCAAACTCGAAAATTTGGAGAAGCATAGAGTTATTCATGTTGCTAAACCTCACGCTTGTCAATTGTGTCATACCTCTTTTTCTAAGCCACAAAGTTTGGTGAAGCATTTGAAGTCTCATACTGAGAAGGTAAATGATATCATAAAGCAAATTAGCAACGACGATCAGAAAGATGTTAATGAACCGAAGAAAGAGTTGAAAAGCGAAGATGAGTCTGAAGATGAAACGTCGACTTTGAACGAGCCTGATGAATTTGGAAACGCGCCTGAGTTGTTCAAATGTGAAATATGTGGTCAATATTGTTCCACgatgaaaaatttgaagaggCATGCTCTGATTcacggagagaaaaaatattcttgttTTGTGTGCAAGAAGTGGTTCTTCAGGCCCGATACGTTGAAGAAGCATGCTGAGAAACATGGACATGGGTTACTGGACAATTTGATGGAGGATAATAAATTGTATGATTCGGATGATGAACCTTTTCCGAATTCTACCGGAAATATTTTTGGGGATAATGACAATTCGAAAAAGGATGATAGCGATGAGGATGGAACTGGAGAGTACAAATGTCAGCATTGTGAGAAAGTTATGGCTACGAAAAAGGGGTTGAGAAGGCATGTTTCGATGCATAAACCGAAAGCTGAACCCGTTGCTTGTGAAATCTGCAAAAAGGTTTGCGCCAGTCAAGCTCGGTTGGTAATCCACCAAAAAACCCACAACAAGCCCAAGGAAAAAGTCCCAAGAGAATACCTCTGTCACATCTGCAGTAAAGTGTACCCAAGTAACTCTTCTCTAACCTATCACATGAGAACCCACACAGGAATAAAACCCCATGTTTGTAAAATCTGCAACAGTGGATTCACAACTACGACAAGCTTAGCCAACCACATGAGAATCCACACCGGAGACAAACCTTTTGTCTGCCACGTTTGCAGCGCAGCTTTCGCCGTTAGTTCAGCTTTCAGAAGACACTTAACTCGCCACACTGGAGAGGCAAATTACCTTTGTAAAACCTGTGGCAAAGCCTTCAAGAGACTCAGTACCCTCAAGGAACACACCTATACTCACTCTGGTGAAAAACCCTATGTTTGTAAAACCTGCGGCGCAGCTTACAGTCACAGTGGAAGTTTATTTGCCCATCAAAAACGTTGTCGAGCCCAATTTGGCGATCAAATGATGGTGGATGATCATCATCACACTGTCGCTCATCATATTCACGTGAACAATGTGCAATCGGCGGTACGATCACTGGCTGTGATAGGTCagatgttttaa
- Protein Sequence
- MAMNSTYFNIPLNMDRVCRICLTESTNMSPIFCSEQEVDHFSDLPQKIQMCGSIEVQEQDGLPSLICNNCIYNASVAHDFRQLCQTSDARLRLYYNKPARSNLMETSTQTEPQTRIVISKKNADQQNSYCVKEEQHILPDIHQPTEAFVQENPIGESPMDIHDQKMYECNLRFEVPKETERMTEDLANAIHANAMNANAINTNVINSNVMNANIINSNTIHSNLVPENTLAIPCAEEISAANVELNERNKIDIGNKTDINNRAEDYLGQELLNECLEDQQTTPPKRKSNRKVKSLQNKTTFSDDEVDDDYYDQSSDSQGSEEPKFKCKVCLKRYSTQKGLKKHSLVHDKKHNCNVCLKTFCKLENLEKHRVIHVAKPHACQLCHTSFSKPQSLVKHLKSHTEKVNDIIKQISNDDQKDVNEPKKELKSEDESEDETSTLNEPDEFGNAPELFKCEICGQYCSTMKNLKRHALIHGEKKYSCFVCKKWFFRPDTLKKHAEKHGHGLLDNLMEDNKLYDSDDEPFPNSTGNIFGDNDNSKKDDSDEDGTGEYKCQHCEKVMATKKGLRRHVSMHKPKAEPVACEICKKVCASQARLVIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKICNSGFTTTTSLANHMRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQFGDQMMVDDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676990;
- 90% Identity
- iTF_01389671;
- 80% Identity
- -