Smag005600.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000020.1:693521-700507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2 6.9e+02 1.8 0.1 3 11 63 71 61 77 0.80 2 13 0.00033 0.044 15.0 0.3 1 23 254 276 254 276 0.95 3 13 0.00011 0.014 16.6 1.8 1 23 284 306 284 306 0.98 4 13 1.3e-05 0.0017 19.5 0.2 2 23 314 335 313 335 0.97 5 13 0.00072 0.095 14.0 0.9 5 23 344 362 342 362 0.97 6 13 0.00011 0.015 16.5 4.1 1 23 369 391 369 391 0.98 7 13 6.9e-06 0.00091 20.3 0.1 1 23 397 419 397 419 0.96 8 13 1.2e-05 0.0015 19.6 0.4 1 23 425 447 425 447 0.98 9 13 2.3e-07 3.1e-05 25.0 1.6 1 23 453 476 453 476 0.96 10 13 3.3e-06 0.00044 21.3 0.5 1 23 482 505 482 505 0.96 11 13 5.1e-06 0.00067 20.8 2.8 1 23 511 533 511 533 0.99 12 13 0.0001 0.013 16.6 0.4 1 23 539 561 539 561 0.94 13 13 0.00012 0.016 16.4 0.1 1 23 567 591 567 591 0.93
Sequence Information
- Coding Sequence
- ATGACATCTGATTCTGAAAAGTATCACTCTAGCTGTTTGATATGTAACAGTAAACTATCAACTAGAAACACTGTAgcaatttttagtgaaaaattagGATCTCGCCTTGAAAAACCTctttcagaaataattttttctgtattagAAATTGATAGGGACAGTAACAATACACACTCCAATGTTATTTGCAGGAAGTGCTCAAAAAAGTTTGAAGAGGTGGATGCATTAGAATGTCGCATGtctgaaataaaatgtgaCATCTTTAACAGTTATAAGCAGACCATAAAAAAAGTACAGGAGTCTTTTTCAAATGACGAAGAGTATAATGACCATGATTATTTGGATACATCGGAAACGCCCATCCAAGAAGTAGCAGGTGTTAAACCAAATCCCGTTTTTAGACAACGAAGTGAAACTACAAAATCAGTTGAAAGCAAAAATAAACATGAAATAAAAGAGGATGAAAATGATATTGAAGACAATGGAACTTCTGACAACGATGTTTCTGATCTCGTAGAATCGATTAAAGAAGATAAAGAAGTGGTTATTAAAGTTGAAGCATTGGACGATATAAACGGAGGAACAAAAgggaattactttaaaaagtcaaaaactAATACTAAAGAGGAAAATGTACAAGATCAgGTTGTATCTCAAGAAGGCTCACTGTATACGTGTTTATTATGTTCCCGTAATTGTGAGAAAGGAGatgcaaaatttattatagCACACTTAAGAACAAAACACAATGTTCGGTTGTATATATGTGATTTATGTGGGctgaaattcagaaaaagaaCTGATCTTTCCGTTCATCTTGATGATCACGTTGCGAAAGAGGAAGGAGACTTTCAGTGTGAGAATTGCAACAGAATATTCAACAATTTGCGACTTTTTAGAATTCACAAGCGCATTCATTATCCTCAAACTAAATCCTGGCCATGTGAAGTATGCGGCAAGCGTTACAGTTCTAGAAATTTGCTGGAAGAACATACTAATACCCATACTGGAAATCGTCCTTACATGTGTAAGTGTGGAAAAGATTTTGCCTCAAAGTATACATACAAGGCACACGTCAAAACGCACGAATTCCGGCCACGACCTTTTGAATGCTCACATTGTAATAAAACGTTTTTGAGTCAGCAAAATCTTAGTCAACATGAAAGAACTCATAATGGCATTAAGGAATACGTATGCGATCAGTGTGGTAAAGCTTTTGGGTCCCCACATAATTTGGAAGTTCATAGCATAGTCCATACTGGTCACAAACCCTATAGTTGTAGGACTTGTGGCAAAGCATTCGCCAGAAAAGCTGAGATTAGAGATCACGAAAGAACTCATACGGGTGAAAAACCATACCAATGTGAACATTGTGGTGCCGTTTTCAGtCAGAGGTCGAATCTGCAGTCTCACAAACGTGCAACTCACTACAATGATAAAAGATACAAATGCGATGACTGTGGAAAAGGATTTAAGCGACGTAGACTTTTAGATTATCATATAAAAGCAGCTCATACTGGAGAACGTCCATACAAGTGTGAAACTTGTACGGCAACGTTTGTTTACCCTGAACACTTCAAGAAGCACATGCGCATTCATACAGGAGAAAAGCCATTCTTGTGTGAAGTATGCGGTAAAGCATTTAACAGCCGAGATAATAGGAATGCTCATCGCTTTATACACAGTGACAAAAAACCATACGAGTGCTTGGTTTGTGGCACGGGCTTCATGAGGAAACCTCTTTTGTATGCTCATATGCGATCACAGGGCCATCTGAACGACACGATTGTTGTGAACCAACCAAGATTGACGACAGAAGACGATCAAATTATCACAGTCTCAGAAGGCAATGTGGAGCTGCTGATGGAAAACTCTGAAGTTGAACAGttGGATGAAACGGAATTATACGTAGCAGGTATAAAAAATCACGTTATCATACATCAGGACGGTAATCAGATATACCATGAAGGAAATGTTTTAAGTATTCCTGCCGATGGACAAATATCTAGTAACCAAGTTCAACATCTAGTTGTCGATGGACAGCTTCTAGAAAATGATGACGATGAATCTAAAGAGGAGATGGAAGATGACGAAGAATTATACAGTTACGAAGATGATGAACACGGTGAAACTCTAGTGCTACCGGGAACTTCTGAATACAAGGAAATCATGGGAGATTCTAAAAATGCAGTTAGATTAGTACAAATAAGAATTCCTACTTCTTCTGCTGGAGATGGGAGAAACTGGCTAAGTTTAGTACAAAGCacttga
- Protein Sequence
- MTSDSEKYHSSCLICNSKLSTRNTVAIFSEKLGSRLEKPLSEIIFSVLEIDRDSNNTHSNVICRKCSKKFEEVDALECRMSEIKCDIFNSYKQTIKKVQESFSNDEEYNDHDYLDTSETPIQEVAGVKPNPVFRQRSETTKSVESKNKHEIKEDENDIEDNGTSDNDVSDLVESIKEDKEVVIKVEALDDINGGTKGNYFKKSKTNTKEENVQDQVVSQEGSLYTCLLCSRNCEKGDAKFIIAHLRTKHNVRLYICDLCGLKFRKRTDLSVHLDDHVAKEEGDFQCENCNRIFNNLRLFRIHKRIHYPQTKSWPCEVCGKRYSSRNLLEEHTNTHTGNRPYMCKCGKDFASKYTYKAHVKTHEFRPRPFECSHCNKTFLSQQNLSQHERTHNGIKEYVCDQCGKAFGSPHNLEVHSIVHTGHKPYSCRTCGKAFARKAEIRDHERTHTGEKPYQCEHCGAVFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYAHMRSQGHLNDTIVVNQPRLTTEDDQIITVSEGNVELLMENSEVEQLDETELYVAGIKNHVIIHQDGNQIYHEGNVLSIPADGQISSNQVQHLVVDGQLLENDDDESKEEMEDDEELYSYEDDEHGETLVLPGTSEYKEIMGDSKNAVRLVQIRIPTSSAGDGRNWLSLVQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392960;
- 90% Identity
- iTF_01392960;
- 80% Identity
- -