Smag001905.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus magnus
Gene Symbol
-
Assembly
GCA_032275165.1
Location
JAUESH010000008.1:2725132-2728158[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1 1.3e+02 4.1 2.2 1 21 96 116 96 117 0.94
2 21 0.00065 0.086 14.1 0.1 1 23 125 147 125 147 0.97
3 21 0.00017 0.022 16.0 1.1 1 23 162 184 162 184 0.97
4 21 0.0017 0.23 12.8 0.3 2 21 199 218 198 219 0.94
5 21 2.8e-06 0.00036 21.6 0.8 2 23 228 249 227 249 0.97
6 21 0.46 60 5.2 0.9 2 23 254 275 253 275 0.84
7 21 6.3e-06 0.00083 20.5 1.2 2 23 282 303 281 303 0.96
8 21 0.00027 0.035 15.3 1.1 1 23 312 335 312 335 0.97
9 21 0.68 90 4.6 4.8 1 23 346 368 346 368 0.98
10 21 2.8 3.7e+02 2.7 0.4 2 23 375 395 374 395 0.82
11 21 0.0056 0.73 11.2 5.5 1 23 401 424 401 424 0.95
12 21 0.011 1.4 10.3 2.8 1 23 507 529 507 529 0.98
13 21 0.0011 0.14 13.5 1.6 3 23 540 561 539 561 0.94
14 21 7.7e-05 0.01 17.0 6.3 1 23 567 589 567 589 0.97
15 21 0.09 12 7.4 0.2 1 23 593 615 593 615 0.97
16 21 1.1e-05 0.0014 19.7 2.2 2 23 622 643 621 643 0.97
17 21 5.6e-05 0.0074 17.5 0.1 1 23 649 671 649 671 0.98
18 21 0.12 15 7.0 1.4 1 23 677 699 677 699 0.97
19 21 0.00012 0.016 16.4 0.2 2 23 706 727 705 727 0.96
20 21 7.8e-07 0.0001 23.3 0.6 1 23 733 755 733 755 0.98
21 21 5e-07 6.5e-05 23.9 1.8 1 23 761 783 761 783 0.99

Sequence Information

Coding Sequence
ATGGAGCCTAAGGAGACTCCAACCCTAAAACGAAAGAGAGGACGTCCTCCCAAGAATCCCCAAATTACAAGTGACGGTATTGTCAAAAGAACGAGAGGTCGACCACGTAAATCTTCATCAGACCacaaagagaaattaaatCCGATAACGAAAGTTTCAGAGAATGTCAAACCTCTGGAAAAATTTGAGGAATATGATTCAACTTCGGAGGATCCATCTGATGATAGTGATGATTTCCTATCTTCCGACCTTCCAACTCAGAAATCTGCTAAACAAAAGAAACAATATCGCTGTCGGTTTTGTAATTTCAGAACTGCCTATAAAAACTCTTACCTATATCATATGGAACGATATAATGAAACTCCTGGCAGGTTTGACTGTGAATTGTGCGACGAGAGTTTCCCTTTGAAAAGAGAATTAGACATTCATTGGAGAAGCCACAGACCAACCTATTTCCCTGATGGCCCAGATAATCCAGGATTCTTTAAATGTGATATGTGTGACGAAAGATTTCCAAAGAGATTTCAGCTTGGCAGACACAGACAAGCACATCGACTGAACGTTTTTCCAGATCCTGAACCGAGGAAAATGAAACGTTGTAGAATCTGcagtaaaagattttattcagAAGTTGCTTTGTTGAAGCATATGGAACAAGCCACTGATGAGCATGAACCTGTGGAATGTgatatttgcaaaaaaatgttcaggtCGAAACGAAGCCTTATGTTGCATCTCAGAATTCACATCGGCCCCCTTATTTGTCACATTTGCGGATCGAGGAAGTACTCGGATGCTTCTATGAAGGTTCATATTCGGCGACATAATAAGGATTACTATATTCATTGTGACGTTTGCAACAAAGGATTCTACAACAAGAGCGAGCTAAGACTTCACATGATCAGTCATACCAACCGGGAAACCAATCGTCCATTTGTCTGCCAAATTTGTGGACGTTCTTATCGCTCTGGTTGTTATCTCAAGTTGCACGTGAAAATCGCACATATCGAGGCTGAGGAATATAAACGCAAGCGGTACAAGTGCGACATCTGCGATTTTGAAACTCATCTGCTGAAGTGCTTAACAATACATAAACAAACGCACACTGGAGAGAATTTGATATCTTGCCAATTGTGTAACAAGATGATTAATAGGAGGTATATGCCGATTCATATACGCACCCACACTGGCGAAAAACCGTTTGATTGCTCGATCTGTGGTAAAGGATTCAATTGCAAGAAGAATCTTGTCAGGCACCACTCTAGAAAACACCAGGCAAAGGTGTCTGTCGAGGTGGCAGTGGACCCATCAGGAAACGATCTCAAGATGGAGACATATGAAATTGAGGAGGATACAATTGAGGTGCCCCACGAGCAGATTATAGAATACACACTTGAAGAAACTGGAGAGATCCAAACAGATATAAAAATGAACACGCCTTTAAATCATAATAACATTGAGGAACTGTTGCAATCAAGTTCAACCGAGGCAGGTGATCAGGCTAAGATTAGTAAAATATATGAGTGTAATTTCTGCGGAAGAAGAATGAAGAAGAAGGCCTTGTTCATGAAACACAAGCTGCGCCATGAGAGGAAACTTTCCGGAGAAAGTGCACATTGTGATAAATGCGAGAAGGATTTCAGTGACGAGGAGAAATTACGGAAACATGAGATCAAAGCTCATCAGGATGAAAAACCGCATCAGTGCAGCCTTTGTGGAAAGTGTTTCAAAACCGAAGAGTTTTTAAGAACACATCTGAAACAACATAACAAGCGATTCGTGTGTGACGTTTGCGGAATCTCGAAGGTTTCAGGATACGATCTTAGGCTTCATAAAAAGAAACACAATCAGGAATTTGTTATACACTGTAATATTTGTAACAAAGGCTTCTACACTAATCAAACTTTAGAGCGGCATCAATTAACGCACACGGGTGAAAAACCTTTTCCTTGTAGGATTTGCAATACTGCTTATGCCAGTGCAGCATATTTAAACATGCATATGAAATCTCATGGAGAGCGGCAAAAACACAAGTGCAATCTTTGCGACTTTGAAAGCTATTGGAAAACAGCATTGAAGGTCCACCTTAGAATTCACACTGGCGAAAATCAAATCTCGTGTGATATTTGTGGGAAATTGGTTTCTAGCAAATCTTATCTTCAGATCCATAATCGAATACATTCGGGAGAAAAACCACATGTTTGCGAAGTTTGCGGCAAGGCTTTTAGCGTTCGAAAATATCTAATTGTTCACCTCAGAACACACACTGGTGAACGTCCCTATGAGTGTAGAGTTTGTCAAAAGAGGTTCACACAGCAAGGATCTCTTAATTCGCATATGAAGTCGCATAGCGAGACTCGATga
Protein Sequence
MEPKETPTLKRKRGRPPKNPQITSDGIVKRTRGRPRKSSSDHKEKLNPITKVSENVKPLEKFEEYDSTSEDPSDDSDDFLSSDLPTQKSAKQKKQYRCRFCNFRTAYKNSYLYHMERYNETPGRFDCELCDESFPLKRELDIHWRSHRPTYFPDGPDNPGFFKCDMCDERFPKRFQLGRHRQAHRLNVFPDPEPRKMKRCRICSKRFYSEVALLKHMEQATDEHEPVECDICKKMFRSKRSLMLHLRIHIGPLICHICGSRKYSDASMKVHIRRHNKDYYIHCDVCNKGFYNKSELRLHMISHTNRETNRPFVCQICGRSYRSGCYLKLHVKIAHIEAEEYKRKRYKCDICDFETHLLKCLTIHKQTHTGENLISCQLCNKMINRRYMPIHIRTHTGEKPFDCSICGKGFNCKKNLVRHHSRKHQAKVSVEVAVDPSGNDLKMETYEIEEDTIEVPHEQIIEYTLEETGEIQTDIKMNTPLNHNNIEELLQSSSTEAGDQAKISKIYECNFCGRRMKKKALFMKHKLRHERKLSGESAHCDKCEKDFSDEEKLRKHEIKAHQDEKPHQCSLCGKCFKTEEFLRTHLKQHNKRFVCDVCGISKVSGYDLRLHKKKHNQEFVIHCNICNKGFYTNQTLERHQLTHTGEKPFPCRICNTAYASAAYLNMHMKSHGERQKHKCNLCDFESYWKTALKVHLRIHTGENQISCDICGKLVSSKSYLQIHNRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECRVCQKRFTQQGSLNSHMKSHSETR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394556;
90% Identity
-
80% Identity
-