Smag005381.2
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000016.1:832245-834575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.2e-05 0.0056 17.9 5.6 1 23 244 266 244 266 0.98 2 15 3.4e-05 0.0044 18.2 1.8 2 23 272 294 271 294 0.96 3 15 2.3e-05 0.0031 18.7 1.0 2 23 363 384 362 384 0.97 4 15 2.4e-05 0.0032 18.6 2.2 1 23 390 412 390 412 0.98 5 15 0.0011 0.15 13.4 0.1 2 23 419 440 418 440 0.96 6 15 3.2e-07 4.2e-05 24.5 0.9 1 23 458 480 458 480 0.98 7 15 5.1e-07 6.7e-05 23.9 1.2 1 23 486 508 486 508 0.98 8 15 2e-05 0.0026 18.9 1.6 1 23 514 536 514 536 0.97 9 15 0.00076 0.1 13.9 0.2 1 23 542 564 542 564 0.99 10 15 0.00015 0.02 16.1 0.2 3 23 572 593 570 593 0.92 11 15 5.9e-05 0.0077 17.4 1.5 1 23 599 621 599 621 0.98 12 15 0.00038 0.049 14.9 4.7 1 23 627 649 627 649 0.98 13 15 4.5e-06 0.00059 20.9 0.5 1 23 655 678 655 678 0.96 14 15 1.4e-05 0.0018 19.4 2.1 3 23 686 706 684 706 0.95 15 15 3.3e-06 0.00043 21.4 5.1 1 23 712 734 712 734 0.99
Sequence Information
- Coding Sequence
- ATGCAGACTGAAGATACATCAccttacaaatatttatttatctatgAAGACAGAACATCAAGATATGTTGTACTTAAAGCCATGAAAAGTAATGACTTCAAAAAAATAGCAATGCAACTTCTAGAGGTGTTAACAATCATCGGCATTCCTCGTATTTTACAATCTGGAAATGGTcgaaattttactgaaaaagtCGTTCAGGAATTGCATTCATTGTGGGACGGATTCAGTATAATTACAGAAGACGTTCTAAAATTTGACTCGagtgaaagaaatttcaaaagtattattAAATCCTGGATGAGAAAACACACAAACAAAACGTGGTttgaaagtattaaatttgttCAAGTTTTACAAAACGCAACCTTTCTTTCCAAGGATGGAAAGTTTCCTTACGAATGCCTTTTTCGCAGAAACGTCTATGAGAATTTTCCTCTTAATTATAACgagaaaagagattttgattgtgAGGAGTTTAAAGTGGAGAACAAAGATCATGATGATACTTCTTCTATTTCTGATGACGATAATCACGAAGATCATAATCACGACGATAATGAAATcagtgaagaaatatttcacaaaGAAACTGatcaaaataaatcttctgtaatttctacaaaaacttttaacttCGTTACgctaaaaaatgaagaagctCCTGCTGAAGGTTCGACTTCAGAAAGCGAAGAAACTTCgcctataaaattaaaagaaaaacaaccCCACAAATGTAAAATCTGCCCCAAAAAGTACACGAAACTAGGACACTTGACGAATCATCTAAAATCGCACAAAGCGAGTAATTTAGAGTGCACagaatgttcaaaaaaattccgtaCTCAGACTCTTTATGAGAATCACATGAGTAAATCTCATAAGGAACAATCTGAAAATCGCAATAGTAAATTTGGCACAGAAATCGAAGATTCTAAACAAAAAGAGAATCCTGCAATTAAAAATCCGCTAGCGAAGGAATCGAAGGAAATTTCTTCCGAGAAGGTTTCGAAATCTAAACAACCGACCcttcgaaaaaaatcaaaccTCCGGGAAAAGCGGCTGAAGTTGAACGGAACCTTGTTAAAATGTAGCTACTGCGaacaaaaattcgaattcccgAGTGTTTTGAAAAGACACATTCGTTCGCACACGAACGAGAGGCCCTACGTTTGTAGGGTCTGCAACAAAAGCTTCAAGCAGCTCGGACATCTTAGCCAGCATTCTATAACTCACACAGATTACAGATCTCTGCAATGTGGTCAATGTGGTGTCAAATTTGAGTCACTAGATGCCCTCAAGATTCATTCCCAGATCCATCCGAGTGAATCAAATCCAAAGTTAAACCCTAATCTTCCAACGACTCGTCTTTTCGAATGCGACATctgtaaaaaagtatttaccACTAAAAGCGTTTTGGAGAGGCATATCTTCACTCATACACatgaaagaaactttgaaTGCGAAGTGTGCGGAAAACGATTCAAGCAATCAGGTCACGTGAAATCTCATATGCTCGTTCACACAGGAGAACGAAAATTCTCCTGCACTGTCTGTTCAAAACGTTTTAGTTTGgcaaattctttaaagaaacATATGTATATTCACAATGGAGACAAACCCTACCAATGTGATGTTTGTGGTGCAAGATTTCTAGAGAAAAGAAATCTGAATGGACATCTAATGACTCACACGAATGAAAAACCATTTGGTTGCAAAATCTGTGGGAAAAGATATACTTTGGCTGATACTTTAAGACGTCACGTGAGTGCTGCTCACGAAGATGGAAGAACATATCAGTGTGAACTATGTGCGAAGATGTTTAAGCAACTGGCACATTTATCAGTTCATAAAAAAGTTCATAATGATGAGAGACCTTTCCAATGCCACCTTTGCgaaaagaactttaagcatAAGAATGTTTTGAAGTCTCATTTGGCTATTCATGCAAATTTTAGGCCTTTTGAATGCGATGAGTGTAAAGCTACTTTTGTTAGAAAGACGAATTTGCAGACTCATATTGCTTCAACGCATATGAATGAGAGACCTCACCTCTGTACTATTTGTGGGAAAAAGTTCAAACAAGTCAGTCATCTGAATGGGCATATTATTGTTCACAGCAATTCTATGCCTTATCAGTGTAATTTCTGTGATCGGAGATGTAACAGGTTGGATAATCTGAAAAAACATATGCGGCTTCACACGAAAGTAAATACAAGTGATACATGTGTTAAAAAGGTCGAGGAAAATATAGTTAGGACTGAAATTATTCCGATGATTCGTAAAGAAGTTCCAGCTGAAGGCTTCCATAATTTTCgcaaaaagatttaa
- Protein Sequence
- MQTEDTSPYKYLFIYEDRTSRYVVLKAMKSNDFKKIAMQLLEVLTIIGIPRILQSGNGRNFTEKVVQELHSLWDGFSIITEDVLKFDSSERNFKSIIKSWMRKHTNKTWFESIKFVQVLQNATFLSKDGKFPYECLFRRNVYENFPLNYNEKRDFDCEEFKVENKDHDDTSSISDDDNHEDHNHDDNEISEEIFHKETDQNKSSVISTKTFNFVTLKNEEAPAEGSTSESEETSPIKLKEKQPHKCKICPKKYTKLGHLTNHLKSHKASNLECTECSKKFRTQTLYENHMSKSHKEQSENRNSKFGTEIEDSKQKENPAIKNPLAKESKEISSEKVSKSKQPTLRKKSNLREKRLKLNGTLLKCSYCEQKFEFPSVLKRHIRSHTNERPYVCRVCNKSFKQLGHLSQHSITHTDYRSLQCGQCGVKFESLDALKIHSQIHPSESNPKLNPNLPTTRLFECDICKKVFTTKSVLERHIFTHTHERNFECEVCGKRFKQSGHVKSHMLVHTGERKFSCTVCSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCELCAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANFRPFECDECKATFVRKTNLQTHIASTHMNERPHLCTICGKKFKQVSHLNGHIIVHSNSMPYQCNFCDRRCNRLDNLKKHMRLHTKVNTSDTCVKKVEENIVRTEIIPMIRKEVPAEGFHNFRKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392197;
- 90% Identity
- iTF_01390521;
- 80% Identity
- -