Smag015851.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000043.1:17503101-17505434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00064 0.084 14.2 1.2 3 23 11 31 9 31 0.96 2 20 0.00045 0.059 14.6 2.8 1 23 37 60 37 60 0.96 3 20 0.00055 0.072 14.3 1.6 1 23 66 89 66 89 0.95 4 20 1.3e-05 0.0017 19.5 2.8 1 23 95 117 95 117 0.98 5 20 3.2e-05 0.0042 18.2 0.7 1 23 124 146 124 146 0.99 6 20 4.8e-06 0.00063 20.8 0.4 1 23 152 174 152 174 0.97 7 20 3.7e-06 0.00049 21.2 1.1 1 23 180 202 180 202 0.98 8 20 1.4e-05 0.0018 19.4 0.7 1 23 208 230 208 230 0.98 9 20 1.7e-05 0.0023 19.1 0.7 1 23 236 258 236 258 0.97 10 20 3.9e-06 0.00051 21.1 4.1 1 23 267 289 267 289 0.98 11 20 5.3e-06 0.0007 20.7 6.1 1 23 295 317 295 317 0.98 12 20 0.00091 0.12 13.7 3.5 1 23 336 358 336 358 0.96 13 20 1.9e-05 0.0025 18.9 3.1 1 23 364 386 364 386 0.97 14 20 0.27 35 5.9 2.3 1 23 392 414 392 414 0.97 15 20 1.3e-06 0.00016 22.7 2.4 1 23 424 446 424 446 0.98 16 20 0.88 1.2e+02 4.3 0.0 3 19 524 540 524 543 0.94 17 20 8.7e-05 0.011 16.9 0.7 1 23 550 572 550 572 0.97 18 20 0.88 1.2e+02 4.3 0.0 3 19 601 617 601 620 0.94 19 20 8.7e-05 0.011 16.9 0.7 1 23 627 649 627 649 0.97 20 20 8.8e-05 0.012 16.9 1.7 2 23 657 678 656 678 0.97
Sequence Information
- Coding Sequence
- ATGCTTGACGAAAACAAGAAAAGTTTGGCTTGTGACGTTTGCTGCAAAGTTTTCGTGAATCGAAATGGTCTAAAAAGGCATCAAAGGGCTCACTTGGTAAAAATGCCTTACGAGTGTAAACACTGCGAAACAAAGTTTAGTGCTAAAGATAAACTTAAAGATCATTATATGAACATTCACACTGGAACAAGTCCCTACGAATGTACAATTTGCGGCGATAGGTTTAGAAGTAAGCAGGGTcttaataatcataaaatgcATGTTCACAAAGGTTTAAAGCCCTTTGAATGCGACATTTGTAAGAAACGATTCAGAGACCACTATACCATGAAAGTGCACATAATAACTCATATGGAAGGTAAACAACCATTCAAGTGTTCAATCTGTGCAAAAGCTTATGCTAaaccctattttttaaaattacacctTCGTACCCACGCAAACAACAGACCTTTCGCTTGTGACGTTTGCCCGAAAAGTTTTGTTTCGTTATCTTATCTGAATACCCACAAAAAGATACACTTGGACAAGCAAAAATTCGAGTGCCAATTTTGTGGGAAAGGTTACACAACatcatataatttaaaaatccatgagCAGAGTCACTCAGGACTTAAGCCGTTTGAATGTGATATTTGCGAAAAGTCTTTTACGACCAAGGGTTACCAAAAAATACATGTTCTTACCCATCAAAAGacaaaaactttcttttgtGACGTTTGTCCTAAAAGTTTTGTGATGCAGTCTTACCTCAATGATCATAAAAAGATACACTCAAATGATGCACGAGTGAAACGCCACGAGTGCAAAACCTGtggaaaaagatttaaaaagtcgCGCGACCTTAAGGTTCATACGCGTGTCCACACAGGAGAAGCGCCTTTTGAGTGCAAAACCTgtaagaagaaatttaaacacgCAAGCACTCTTAAAATGCACATGAAGTCTCACACTGAAGGAATTCTACCTTTCAGGCgcgaaaagaaaataattgacaaTAAACCCTATAATTGTTACATTTGCAAGAAGCGTTTTCACAAAGAAGCTAATTTAATAAAGCACAgagaaaatcacaaaaagaaaaGACCTTTTGTTTGTGAAGTttgcaaaaaatcttttgtaacgAAATATCATCTCAATGGTCACAAAAAGTTACATGGAGATAAAAAAACCTACGAGTGCGATTCTTGTAAAGAGGGTTTTCTGCACAAGTTCAGGTTAAGGCGTCACGTGATAAATCATTTGCGTGTTCAGACACATGGAAGACCTTTCGAATGTGATATTTGTAAGAAAATGTTCAGGTACAAAAAGCTTCTAAGACTGCATATAAAAACTCATGGAGAAGATGAGGCGGTTACTGAGACTGATAATTTTAACGCGTGTGAAAGTGAGATGGGAGGGGATTCAAGTAGCATTTGTTCTATAGATAATCATTTTGATCGTACTTCAATGTCTAATGCGGGCGAAATAGTTAGTATTCCGGAGACCAAATCTGTGAGCGAAACGGAAGGTATAGAGGATAGGAATATTACAGAAATAGCAGTGGTAAACCACCAAAAACTTCACTGGTGTGATCTATGTGAGTTAGAGTTCGAAACTGTTGAGAGTCTGAGAATTCACTCGGACACTAGCGACAACCATAAAGCTTTCATTTGTAATATCTGCAACAAACGCTTCCAGTTATATGACGAGCTTCAAACTCATGttaaaattcacttaaaaaagaATCAACCTCTGGAATATAGCGTGTGTAGGAATATTACAGAAATAGCAGTGGTAAACCACCAAAAACTTCACTGGTGTGATCTATGTGAGTTAGAGTTCGAAACTGTTGAGAGTCTGAGAATTCACTCGGACACTAGCGACAACCATAAAGCTTTCATTTGTAATATCTGCAACAAACGCTTCCAGTTATATGACGAGCTTCAAACTCATGttaaaattcacttaaaaaagaATCAACCTCTGGAATGTAGCGTGTGTAAGGAACAGTTTAGAAGCcagcggaattttaaattgcatcaGATGTCTCATGAAAAGGACCAAAATTACATACTAAGTACAATATATAAGAAGTATGCATCTGATGTTCACTCTAATCAGGCTTTGGTAGAAGATAAAATAGTTAAAGTGAAGACTGAACCTGTAGGTGAAATTGAGGATACAGAGAATAGTCATTTACAAAGTCAAGCGGCGtcgatttgtaaaaaaacGACTAAAAGTGATGAGtcgaatttaatttctataaagAAGGAACCTGATCACTCGGTAGatgtaaatttcgaaatagaaTTTGAAACTGTAAAGCATGAAGTGAAAGAGGAGGTTGATTAA
- Protein Sequence
- MLDENKKSLACDVCCKVFVNRNGLKRHQRAHLVKMPYECKHCETKFSAKDKLKDHYMNIHTGTSPYECTICGDRFRSKQGLNNHKMHVHKGLKPFECDICKKRFRDHYTMKVHIITHMEGKQPFKCSICAKAYAKPYFLKLHLRTHANNRPFACDVCPKSFVSLSYLNTHKKIHLDKQKFECQFCGKGYTTSYNLKIHEQSHSGLKPFECDICEKSFTTKGYQKIHVLTHQKTKTFFCDVCPKSFVMQSYLNDHKKIHSNDARVKRHECKTCGKRFKKSRDLKVHTRVHTGEAPFECKTCKKKFKHASTLKMHMKSHTEGILPFRREKKIIDNKPYNCYICKKRFHKEANLIKHRENHKKKRPFVCEVCKKSFVTKYHLNGHKKLHGDKKTYECDSCKEGFLHKFRLRRHVINHLRVQTHGRPFECDICKKMFRYKKLLRLHIKTHGEDEAVTETDNFNACESEMGGDSSSICSIDNHFDRTSMSNAGEIVSIPETKSVSETEGIEDRNITEIAVVNHQKLHWCDLCELEFETVESLRIHSDTSDNHKAFICNICNKRFQLYDELQTHVKIHLKKNQPLEYSVCRNITEIAVVNHQKLHWCDLCELEFETVESLRIHSDTSDNHKAFICNICNKRFQLYDELQTHVKIHLKKNQPLECSVCKEQFRSQRNFKLHQMSHEKDQNYILSTIYKKYASDVHSNQALVEDKIVKVKTEPVGEIEDTENSHLQSQAASICKKTTKSDESNLISIKKEPDHSVDVNFEIEFETVKHEVKEEVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -