Smag002388.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus magnus
Gene Symbol
-
Assembly
GCA_032275165.1
Location
JAUESH010000008.1:8964874-8968275[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0061 0.8 11.1 2.0 1 20 23 42 23 44 0.96
2 20 0.00011 0.014 16.6 0.3 1 23 51 73 51 73 0.99
3 20 0.0047 0.62 11.4 0.3 3 23 81 101 80 101 0.98
4 20 1.1 1.4e+02 4.0 3.4 1 23 107 129 107 130 0.94
5 20 1.1e-05 0.0014 19.7 0.6 2 23 606 627 605 627 0.97
6 20 4.9e-06 0.00065 20.8 2.3 1 23 633 655 633 655 0.98
7 20 2.8e-05 0.0037 18.4 1.2 1 23 660 682 660 682 0.98
8 20 0.0008 0.1 13.8 0.4 2 23 693 715 692 715 0.94
9 20 6.1e-07 8e-05 23.7 0.5 1 23 721 743 721 743 0.99
10 20 1.1e-05 0.0015 19.7 0.3 1 23 749 771 749 771 0.98
11 20 7.9e-05 0.01 17.0 2.2 2 23 792 813 791 814 0.95
12 20 1.8e-06 0.00024 22.2 1.9 1 23 820 842 820 842 0.99
13 20 0.00017 0.022 16.0 2.0 1 23 847 869 847 869 0.97
14 20 3.5e-05 0.0045 18.1 1.1 2 23 887 909 886 909 0.95
15 20 4.5e-05 0.006 17.8 0.4 1 23 915 937 915 937 0.99
16 20 3.9e-05 0.0052 18.0 0.8 1 23 942 964 942 964 0.97
17 20 5.5e-05 0.0072 17.5 0.1 2 23 967 988 966 988 0.98
18 20 0.00049 0.064 14.5 0.2 1 23 994 1016 994 1016 0.96
19 20 0.00026 0.034 15.4 1.1 1 23 1023 1045 1023 1045 0.97
20 20 7.2e-06 0.00094 20.3 1.8 1 23 1050 1073 1050 1073 0.95

Sequence Information

Coding Sequence
ATGCATGTGCACTTACTTCAGCATGTTGAATCTTACATATCTGGTCATAATAAAAGCGACGAAATTTACAAATGTAAAAGTTGtgcaaaagaattttctaagGCAGAAAACTTTAAACTTCATATATTCCACTACTCAGGATTTAAGCCATTTCAATGCGACCTTTGCTTAAAGGCTTATGCGACCTTAGATCTTCTAAATGTTCATAAACGCACACATGTAGGGAAACAAATCCGCGACTGTAAATTCTGTGGAAAAGAATTTGTTGGGGTCCGTTATCTTATGCTGCATGAACGTATGCACATCAAAGAAAAGCCTTTCAAGTGCAGATTTTGTGAAGAAAGATACGCAGCTTCGTGTGAATTAAAACTCCATGCTCTTCAACATCACGATCCTACAGAGTATAATGGACGTAGGAAGAAGCGTGGTCGATCCGTGAAGAGTGGTCGATCTAGGACATGTGATCAACCTAAGAAGTATTATAAACTTACGAAGTGTGATCAACCTGCCAAGTCTGAGTCACCTGCGAATTATGAACAACTTACAGAGTCTGAACAACCTACGGAGTGTGAACAACCTACGAAGAATGGAGAATCTACGACGTGTGATCAATCTAAGAAGAGTGGCCGACCTAGAAAGTGTCTTCAACCTATCAAGTATGAACAACCTATGCAGCGTGGTCGACCTAGGAAGTGTAATCAACCTAAGAAGCATTATAAACCTACAATGTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAACAATCTATGCAGACTGATCAACCgatgaaaattaatcaatcCACAGAATCTGAACAATTTATGACGTGTGATGAACCTATCAAGAGTGAACCACTTACGGAGTATGAACCTACGAAGAGTGACCAATCCACGAAGAGTGACCTGCCCACAAAGAGTGATCAATCTAAGAAGATTGATCAACCAATCGAGATTAATCAATTCACGGAGTCTGAACAGCCTACGATATGTGATCAACCTAAGAAGCGTGGTCGACCTAAGAAATGTGATCAATCCAAAAAGTGTGATCAACCTAAGATTGATCAACTTCAGAAGAGTGATCAACCGAAAAAGATTGATCAACCGAAAAAGATTGATCAACCTAAGAAGATTGCTCAACCTGAGAAGTATGACCAACCTATCAAGTGTGCTCaacctaaaaaaaatgatcaacCTAATAAGATTGATCAACCTATCAAGATTAATCAATCCACGGAGTCTCAACAGTCTACGATATGTGATCAACCTAAGAAGCGTGGTCGACTTAAAAAGTGTAATCAACCTAAGAAGTGTGATCAACCTAAGAAGATTGATCAACCTAAAAAGATTGATCAACCTAAGAAGATTGATCAGCCTATCAAGTGTGACCAACCTATCAAGAGTGctcaatctaaaaaaattgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGATCAACCTAAGAAGATTGATCAGCCTATCAAGTGTGACCAACCTATCAAGAGTGctcaatctaaaaaaattgatcaacCTAAGAAGATTGATCAGCCTATCAAGTGTGACCAACCTATCAAGAGTActcaatctaaaaaaattgatcaacCTAAGAAGATTGATCAGCCTATCAAGTGTGCTCTACCTAAAAAGCTTGATCAACACACAAAGAGTGATCAATCCACGAAGATTGATCAACTTCCGAAGAGTGACGTATGTGCGAAAAAGGACCTACCCACGACCTGTGAAATTTGCGCAAAAAGTTTTACGAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGGACAAACCGTTCAAATGTGAATTTTGTCCGAAGACTTTTCCTAGAAAATGGTGTTTAACAGCACATTTAAAAGTTCACGAAGACAGGACTTTCGTGTGTGAGATTTGTTCCAAAAGTTTTCGGAGAAAGGACATTCTAGAGAAGCACAAGAAGGTACACGAAAAACCAGTAAAGAATGATCCACTTACGCAGTGTAAAATTTGTGGACTTTATTCTTCGTCCCGTGATACTTTAAGGACTCATATGGTGGTAAATCACTCAGAATTAAAACCATTTCAATGTCAAACTTGTGAGAAGAGTTTTCCTAGAAAATGGGCGTTAACAGTACACATGAAAATTCACGAGGACAAAAAGCCTTTTGTTTGTGATATTTGTTCCAAAGGTTTTATGAGAAAGGCCACCCTAAGCGACCACATGAAGGTGCACCTGGTCAAACCTAAGATTTGTAATCAGTCTAAAAATGGTCAACTTAAGAATGATCAATCTAAGTGtaaaatttgtggaaaaacTTATCCGTCACGTCATGGATTATGGGTTCATACGATAAGTCATCACACCGAGgataaatcctttaaatgtaaattttgtcCAAAGAGTTATCCTAGAAAATGGCTGCTAACGTCGCATATGAAAATGCACGAAAAAAAGGCTTTTTCATGTGATATTTGTCCGAAAACTTTTCGGAAAAAGAACTACTTGGACCTGCACAAGAAGTTACACAGGGAAAAACGCACGAAATGGGATCAACTTGCAAAGACTGACCCACTTACGAAGTGTAAAATTTGTGGTACATATTATGCGACTCGTAGTAATTTAAAGACTCATACAATAATGTATCACTCAGAGTTTAAACCCTTCAAATGTAAACTCTGTCCGAATAGTTATTCTAGAGAATGGGGATTAGTGTCACACATGAGAATGCACCAAGAAAAGGCTTTTGCATGTAAAATTTGTTCCAAACGTTATAGGAGAAAGGGTGCTTTGGACTTGCACATGAAGTTACACAGGGACAAATGTGAAATCTGTGatgaaatatttctggatTCAAGTAGCCTTCAATTACATATGCGTATTCATAAAGTTGAAACGGTTTTCGAATGTGATGTCtgtaagaaaaatttcaaaaccagAGAGAGTATCATAGATCACGTAGCTATTCATTTGGAAAAAGCCCCTTCATTTTCTTGTCGAGTGTGTAATGAAACTTACAAGTCAGCCAACTTTTTAAACACTCATATGAAAGCTCACGCGATTCCTAAGTTCGAATGTAACATTTGCAAAAAGtcttattttagaaaaagtgatttaatgACACATATGTACAACATTCACGTAGAAATTCATTCTCCGGAGTTGGACTGTGATATAGTTCAAGAGGTgttgaattctgaaaaaattcctgCAAGACGGGGCTTTGGTAAATTTCCTCTGAATGAGGAACTTCATTATCCATTAGATACAAGTGACGTAGAAATTGAAGACATAAAGATAGAACTTAAAATTGAGGATTATTGA
Protein Sequence
MHVHLLQHVESYISGHNKSDEIYKCKSCAKEFSKAENFKLHIFHYSGFKPFQCDLCLKAYATLDLLNVHKRTHVGKQIRDCKFCGKEFVGVRYLMLHERMHIKEKPFKCRFCEERYAASCELKLHALQHHDPTEYNGRRKKRGRSVKSGRSRTCDQPKKYYKLTKCDQPAKSESPANYEQLTESEQPTECEQPTKNGESTTCDQSKKSGRPRKCLQPIKYEQPMQRGRPRKCNQPKKHYKPTMCDQLIKSEPLTEYEQSMQTDQPMKINQSTESEQFMTCDEPIKSEPLTEYEPTKSDQSTKSDLPTKSDQSKKIDQPIEINQFTESEQPTICDQPKKRGRPKKCDQSKKCDQPKIDQLQKSDQPKKIDQPKKIDQPKKIAQPEKYDQPIKCAQPKKNDQPNKIDQPIKINQSTESQQSTICDQPKKRGRLKKCNQPKKCDQPKKIDQPKKIDQPKKIDQPIKCDQPIKSAQSKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDQPKKIDQPIKCDQPIKSAQSKKIDQPKKIDQPIKCDQPIKSTQSKKIDQPKKIDQPIKCALPKKLDQHTKSDQSTKIDQLPKSDVCAKKDLPTTCEICAKSFTKRSYLMIHMISHSEDKPFKCEFCPKTFPRKWCLTAHLKVHEDRTFVCEICSKSFRRKDILEKHKKVHEKPVKNDPLTQCKICGLYSSSRDTLRTHMVVNHSELKPFQCQTCEKSFPRKWALTVHMKIHEDKKPFVCDICSKGFMRKATLSDHMKVHLVKPKICNQSKNGQLKNDQSKCKICGKTYPSRHGLWVHTISHHTEDKSFKCKFCPKSYPRKWLLTSHMKMHEKKAFSCDICPKTFRKKNYLDLHKKLHREKRTKWDQLAKTDPLTKCKICGTYYATRSNLKTHTIMYHSEFKPFKCKLCPNSYSREWGLVSHMRMHQEKAFACKICSKRYRRKGALDLHMKLHRDKCEICDEIFLDSSSLQLHMRIHKVETVFECDVCKKNFKTRESIIDHVAIHLEKAPSFSCRVCNETYKSANFLNTHMKAHAIPKFECNICKKSYFRKSDLMTHMYNIHVEIHSPELDCDIVQEVLNSEKIPARRGFGKFPLNEELHYPLDTSDVEIEDIKIELKIEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-