Smag001914.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000008.1:2749221-2754611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.012 1.6 10.1 0.2 1 23 102 125 102 125 0.94 2 28 1.9e-05 0.0024 19.0 1.6 1 23 131 153 131 154 0.95 3 28 0.00013 0.017 16.4 0.3 2 23 160 182 159 182 0.95 4 28 0.00061 0.08 14.2 1.8 1 23 187 210 187 210 0.96 5 28 2.8e-06 0.00036 21.6 0.4 2 23 217 239 216 239 0.94 6 28 7.4e-06 0.00097 20.2 0.8 1 23 245 267 245 267 0.97 7 28 0.007 0.92 10.9 0.3 5 23 276 294 274 294 0.97 8 28 2.1 2.8e+02 3.1 0.4 1 23 413 436 413 436 0.82 9 28 3.8e-07 5e-05 24.3 1.3 1 23 442 464 442 464 0.97 10 28 0.23 30 6.1 0.3 3 23 471 492 470 492 0.94 11 28 0.12 16 7.0 1.4 1 23 497 520 497 520 0.94 12 28 4e-07 5.3e-05 24.2 0.4 3 23 529 550 527 550 0.94 13 28 0.24 31 6.1 0.8 1 14 556 569 556 572 0.88 14 28 1.1e-05 0.0014 19.7 2.1 1 23 798 821 798 821 0.97 15 28 0.00021 0.028 15.6 2.6 1 23 827 850 827 850 0.97 16 28 5.9e-05 0.0078 17.4 1.0 2 23 889 911 889 911 0.92 17 28 9.1e-05 0.012 16.8 2.2 1 23 917 940 917 940 0.98 18 28 0.00093 0.12 13.6 0.8 2 23 1033 1055 1032 1055 0.94 19 28 0.02 2.6 9.4 4.5 1 21 1061 1081 1061 1084 0.95 20 28 7.8e-05 0.01 17.0 1.6 1 23 1134 1157 1134 1157 0.96 21 28 1.6e-05 0.0022 19.2 1.9 1 23 1163 1186 1163 1186 0.98 22 28 0.019 2.5 9.5 2.1 1 23 1200 1223 1200 1223 0.71 23 28 9.7e-06 0.0013 19.9 1.1 1 23 1229 1252 1229 1252 0.96 24 28 0.00039 0.051 14.8 4.3 2 23 1258 1280 1258 1280 0.95 25 28 7.8e-05 0.01 17.0 2.5 1 23 1285 1307 1285 1307 0.95 26 28 0.0057 0.74 11.2 1.2 2 21 1314 1333 1313 1336 0.94 27 28 8.6e-06 0.0011 20.0 0.9 1 23 1342 1364 1342 1364 0.98 28 28 2.9e-06 0.00038 21.5 1.0 1 23 1370 1392 1370 1392 0.98
Sequence Information
- Coding Sequence
- ATGATCTCATTGGCGAGTATTAACTTCTTAGAAGCCCTAAAGAGAGACACCGTCCAAAAGAAAGCAACTTCATCATCACCTAAAACTTCTTCTGTTCGGAAAAACGTTATTCAAACGAAGAAACCAGCTTCAAACCCAGGACCCAAAGTACAAAGAGCACCAAAAAAACCGAAAGCACCAAAAGTACCTACAACTAAAAACATCGACTCAAATCAACCACCAAAGCGGAGAAGAAGGAAGAAAGCATCTGATGAGACATCTGGAGAAAACAATTCTGAAAGTACTGCTAAAGAGAAAGTTGAATTCGTTTGTTCAGGCTGTGGCACAATATTCGCAAAAAAGGAAATACTTCAGGCTCATTTTATACGAAAACACACTGAAGGGTACAATTTTTCTTGTGACACATGTGGTAAACAGTTTAAACTCAAGGGTGACCTTGTAACTCACATTAGACTCCATCACTTAGAACCACCTACAGTCTGCGATGTATGTGGTAAAACCTACAAAAATAGTCTTTCTCTCTATGTTCACCAGAAATATGCTCATTATAAAGCAAGATTTGAGTGCCAGATTTGTAAGCGATGTTTGGTTACtcaagaaaatcttgatcATCACATTGAAGTGATGCACGGACCAAAACATACTTTAGTTTGCGAGGAATGCGGAAAAACGTTTACTAAAAGAGTCAGTCTTCGAAGACATGTTAACAATGTTCATACTAATAATAAGGCATACGTTTGCCCAGTGTGTAGTAAAGCTTTTGCTCAAACGTATCATTTGAGACAACATCTGCTTCTACACACGGGTAAACGTATATATCGTTGTGAATGTGGAAAAGAATTTGCACAAAAACCGGGACTTTTGAGTCACAGAAAAAGTCATCCTGGTGAACATCCTCCTTTACCGATAATTCGATTAGATCAAgttcttaaggaatttttgaacaaGACATCTCGTAAAGGAGAACAAGCGAAGCATCTCAAGCATTCGAAGTCAAAGTCTCGTCTAACTTTGAAGAAGATTATATTTAAATCGATTGGTGGTGTCAACTTCCAACCAAAAATAATCAAAGAAATAAACTTCGTGAATGCTTCAAACAAAAAGAAACAGAAGGCTCATATTAAGTCaagaaaatcatcaaaaaagttgaaagttcTTACGGTTAATCTTCCGTCAGCATCAGCCGAAAATAATCTTACATCTCCAGAACCTGTAAAGCCACCACCAGCATCTGAATTCATTTGTTCAGTCTGCGGTGCTAAATTCCTTCGAAAAGTAATTCTGCAAACCCATTTTGCTCGCAAACACTCTGAACAATACAATTTTCCCTGTAAAGAATGTGGTAAAAAGTTCAAGGTCAAAGGAGATCTCACAACTCACATGAGGTTTCACCTAGAACCACCTGCAGTTTGTGATGCATGTGGAAAAACTTACTTGAACACTCGCTACCTTTACTTACATCAGAGGTATGCTCATTACAAGACTGCATTTCCCTGCTCTCTTTGCAAACGTTTTATGGCTACTCAAGAAAATCTAGATCAACACATACATCAGCAACATAGGCAAAAAAAGGAGAGAGTGATTTGTGACGAGTGCGGTAAAAGTTTTTCCACCAATGACACTCTTCGGCGACATGTTCGATTTGTACACTTCAAAGTCACAACATACTTGTGTGAGATCtgcgaaaaatcttttgctcGAAGGAAATGTGCCAGAGCAAAGCAAAAGCCAACATCTCTTCTCAGACTGCAGGAAAATCTTGAACAGCCTCTCAGAACCACTCAAGCGTCTAAAACTAGATTTAACGTCGTTTCTACTTTAGTTCCAACATCGAAGCTGTTTTCAACACTAGAGGAAACAATTCAGAACACAAATTTGGCAAAACAATCAAGGAATGTTCGTCAgacacctaaaaaaaaattaaaaatcgtttctACTTTAGTTCCAACATCGAAGCGGTTTCCAACACGAGAGAAAACAGTTCAAAACACAAATTTGGCAAAACAAATAACGAATGTTTCTCagacacttaaaaaaaaattaaaggtcGTTCGTACTTTAGTTCCAACATCAAAGATGTTCCCAACTTACGCAGCTATGAATCTTAATGAATTCAAAGATTCTTCAAGAGTGTTAATAAGCAGTACAAGTGAACCTGTTGCGGAATCGGATCCACTCGCACTCAATAGTTTGGAACAACCTCCCGATAATGGAATTCGAATTAACATAGAGTCATTCTTCGTAAACAGTTCTCAGTCTTCTACAGCTGGTAAAACTGATAGCATCGCTGAAAGGAATGAATCTTTGCAAAACGAAGTGCCAACAGAAATGACGATTAAAAAACCCGACCCTCTCTCTATCGAAAATATAGGCGTAGTGACATCAGGTATGTTCAAGTGTAAAGTTTGcgataaattattcaaacgcAAGGAGTCCTTGAAGGTCCATTACATTCGTTTACACTCAGACATTCATCGTTATTCCTGTGAAGAATGTGGTGAGagatttaagttattttactATCTTAATCGTCACAAAAGGCAACGTcatcaaaaacaaaatttaacgGAAAGTCTACAATCTTCTGAAAACAGTTTGAATCAAGATTCACaaccaaaaaagaaaacaagaaTAAGATATAAGGAGTTGGATGAGAGCGACCGGACTTGCAAAATTTGTGATAAAAAGTTCGCCAGACCTTATGACCTGAAGCTTCATAATACGCGTCTGCACACATGGGAATATAAATATCAATGCGGAAAATGTTCTAAACAGTTTAAGATTGCTAAAGACCTCACCAGTCACATGAAGAGATTTCATCCAGGCTCAATTTCAATAGAAGCTAAACGCAATTCTAGAAAAAGGCAACAAGAATCTGCACAAGttcaagaagaagaagaagacgaTCACGAAATTGAAAACCACTCCGTCGAAACTCAACAGGAATCTGGAAATGTTCAACAAGCTCCTACAGAAGTTCAGCAAGAAACTACCAAAGTTGTACAAGAAGAACAGAATTCAGCAACTCCTTCATCTACTGTAATCGAAGATTCACCTTCAAAGAAAAGAAAGCAAGTACATAAAAACTTAGAGCTGCCTTGTACCATCTGTAATAAGAAATTTGGTAGAGTTTATGGTCTGAAGGTCCATCATATTCGTATGCACACaacggaatttaaatttccctgtGACCTCTGCAGTAAACAGTTTAAGCTTCTTAAAGATCTCCGCAGGCACCAAAAGTGCTTTCATTCAAAAGGAATCCCAACAAGAACCCAACGGAATGCGGgaaaaaggaaacaaaaagATCCAGATCAACAGGTTGAAGAAGTGGAACAGAATTCGAAAAAGACTCCTTCCTCTACTACAATGAAGCAAAGTCCTAGTAGAAAAGGATTATTTATTTGTGAAGTATGTGGTAAGATCTGTACACGCAAGCAATCTTTACAGTTGCATATAACTAGTAGACACAGTGGAGAATTTAACTATAGATGTGCAGACTgtggaaaagaatttaagaccCGGAAAGTTCTATGTGCACACTTAAAACGTGGtcatgaaaaacaaaaagtttcagttgGGAAGGATGCAGGCGAGTTTTATTGTAACATTTGCGGCATCAAAGTGTTGCGCAGAAGCACTCTCAAAATCCATCATCTTCGTAGGCATACGCAtcagtttaaattttcttgtaaatGGTGTGGCAAAAACTTCAAAGTCCAAGGAGATCTTACAACTCATACGAGGCTTCGTCATCTGGAACCCCCTGCAGTTTGCGAGGTTTGCGGCAAGACGTGCAAAAATAAACATTCTCTTTATGTGCACCAAAAATACAGTCATTTCAAAACTAAATTCTTGTGTACCGTTTGTAACAAATGTTTCGCTTCTCAAGAAAATCTCGATCAACACATATTCAAACATGAAAGGAAGAACAGATTAACTTGCGCAGAATGCGGGAATACATTTGCGACTAAATTTACTCTTCTAAGTCATTTACGTTGTGTGCATCATGAAGAAAAGACGTTTTCTTGTCAGGTTTGTGGAAAATTGTTTCCTTCACAGTCTAGGTTGAGGAAGCATCTACTAACTCACACAGGTAAACGACTTTTTGTGTGTGATATTTGTGGGAAACCGTTTAAGCACAAACCTAGTTTAATTAGCCACAGAAAACTGCATCCTGGTGTGCACGCTCCTCTCCCTGTTATTCGATTGGATGATGTCCTTAGTGAGTTCATCCAGAAATag
- Protein Sequence
- MISLASINFLEALKRDTVQKKATSSSPKTSSVRKNVIQTKKPASNPGPKVQRAPKKPKAPKVPTTKNIDSNQPPKRRRRKKASDETSGENNSESTAKEKVEFVCSGCGTIFAKKEILQAHFIRKHTEGYNFSCDTCGKQFKLKGDLVTHIRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECQICKRCLVTQENLDHHIEVMHGPKHTLVCEECGKTFTKRVSLRRHVNNVHTNNKAYVCPVCSKAFAQTYHLRQHLLLHTGKRIYRCECGKEFAQKPGLLSHRKSHPGEHPPLPIIRLDQVLKEFLNKTSRKGEQAKHLKHSKSKSRLTLKKIIFKSIGGVNFQPKIIKEINFVNASNKKKQKAHIKSRKSSKKLKVLTVNLPSASAENNLTSPEPVKPPPASEFICSVCGAKFLRKVILQTHFARKHSEQYNFPCKECGKKFKVKGDLTTHMRFHLEPPAVCDACGKTYLNTRYLYLHQRYAHYKTAFPCSLCKRFMATQENLDQHIHQQHRQKKERVICDECGKSFSTNDTLRRHVRFVHFKVTTYLCEICEKSFARRKCARAKQKPTSLLRLQENLEQPLRTTQASKTRFNVVSTLVPTSKLFSTLEETIQNTNLAKQSRNVRQTPKKKLKIVSTLVPTSKRFPTREKTVQNTNLAKQITNVSQTLKKKLKVVRTLVPTSKMFPTYAAMNLNEFKDSSRVLISSTSEPVAESDPLALNSLEQPPDNGIRINIESFFVNSSQSSTAGKTDSIAERNESLQNEVPTEMTIKKPDPLSIENIGVVTSGMFKCKVCDKLFKRKESLKVHYIRLHSDIHRYSCEECGERFKLFYYLNRHKRQRHQKQNLTESLQSSENSLNQDSQPKKKTRIRYKELDESDRTCKICDKKFARPYDLKLHNTRLHTWEYKYQCGKCSKQFKIAKDLTSHMKRFHPGSISIEAKRNSRKRQQESAQVQEEEEDDHEIENHSVETQQESGNVQQAPTEVQQETTKVVQEEQNSATPSSTVIEDSPSKKRKQVHKNLELPCTICNKKFGRVYGLKVHHIRMHTTEFKFPCDLCSKQFKLLKDLRRHQKCFHSKGIPTRTQRNAGKRKQKDPDQQVEEVEQNSKKTPSSTTMKQSPSRKGLFICEVCGKICTRKQSLQLHITSRHSGEFNYRCADCGKEFKTRKVLCAHLKRGHEKQKVSVGKDAGEFYCNICGIKVLRRSTLKIHHLRRHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPAVCEVCGKTCKNKHSLYVHQKYSHFKTKFLCTVCNKCFASQENLDQHIFKHERKNRLTCAECGNTFATKFTLLSHLRCVHHEEKTFSCQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKPFKHKPSLISHRKLHPGVHAPLPVIRLDDVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -