Smag025235.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010015618.1:8459-10731[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-09 1.5e-06 28.6 0.0 2 41 120 159 119 162 0.93
Sequence Information
- Coding Sequence
- ATGCACGAAAGTAAGGGGCAAATGTTGTCCTCACTGTGGACGGGCATCGGTTGTACTCGTAGTTCGGTCAGCGCTTCTGCGGTAAAAGTGCGTCTGCTATCCCAAGATGGGGCATGTACTACCCCGTACGGAGCTATAAGATTTACCACGGCGTTTGCCTCGAGGaggaaaattgatgaaatgaAAGGCGGGTCTCATCCAGAGAAGGTACAAATGATAAATTCAGTGCGAGTTAAACATAGGAATCCGAAAGTAATGCGTCCAGCAAAGGAAGAGTCCGAAAGTTCCGGTTCAGATGAAACTGGAAGAAGAATGACTACGAAGAAAGAAGCAGAGAAACCAAAAGTGGCGTGGAATCCAGAGCTGATGATCCTCGCTGTAAATGCTGTGCGCGCTAAAAAAATGGGAAGCACTAGAGCAGCAAGAGTTTTCCAAATTCCAAAGAGTATACTTTTAAAGTATCTCAACGAGGAAATGGCCAACGAAGAAATTATTGTACCATGTTCGACAAGGGGGGGTGGTCGGAAGAGAGTCTTCACTCCAGAGCAGGAAGAGGacctaaaaaagtatttacttTATGTACAGGAAAGGTATTTCGGATTGGCAAAAGAAGAGGTAAAAAGTATTGTACTTCAGTTCACAAAGTTAAAAGCCATTACAGGTTTCGGTCCTGCTGGAAATCCTGGTTTTTCGTGGATAAAAGCTTTCCTCAGACGACATAATTCAATAGTTCCTCAGCATCCACGCGAGTTAAGAAAGCATAGTTccgtttcaaagttttttgCTTTAATAAAGCGGGAAGTAGAAGCAAATCATTATTCCgcaaatatgattttcaaTGTGGACGAAACCGCCTTTTCTATAGTGCACTCTAAAAACCCCCAATTTCGACTCATGAAACGACAAGAGCAAGTTCTGCGGGCGAAAAAAGACTCTTATTTGACAGTAATCACGTGCATGGGTGCCGCAGGAAACTTTGTACCGCCAATGTTTATTTTCCCGCGACACAAAGCAACATCTGAGTTAATGAGAGGAGCGCCACCTGGAGCTGTCGCAACATGTCACCCTTCAGGTTGGGTGCAATTGGAATTGTTCACACAGTGGTTCCGTCACTTCCTGAATGCGACCAAACCGACAAAAGAAAATCCTGCACTTCTAATCCTTGATGGACAACAAAGTCAcacgaaaaatattgaagtgATCCGATTAGCGCAAGAGAATCACGTTTCCATCATCAGCCTCCCACCGCTGACTCTCAACAAGCTCCAGCCAGTTTACAAGTCCTTCATGGATCCCCTGAAAACCTTCTATAGCGAGGAAGTCCGGAAATGGATGAATCAGAACCTTCGTCCTCTGAGTTTGGATGTCGTCGTTGAACTTTTCAGCAAAGCTTATCTGCAAGTTTTAGACTGCAACATTGGagtcaaaggatttcgtgacACGGGAATCATGCCGCTCAACCCAGAGATGGTCTCTCAAGACTTTCCGGATTTAAAGGATGAGGATTTAGAGGGCGCGAAAGTAGAGAAGTTCCTCACTCACATGATGGACCACCTCTCGTCTCCGGACGAATTGAATTCCGTGAAGCTGAAACTGAAACCGTCAACGTCTGAAGCTCCTGATTCTCAGAAGTATCCTTCCCTTCGAGAGGTTTTAAGACTTCCTGTATCAGAGGAGTTTTCTGAAGAAGATGAAGAATCGGATACAGAGTATTCAGTTGCGAATATAAAATCAGAAATCGAAGTGGAATGTATGTTCTGTAGGCAGTTACAATCGGAAGACGCTACGGGTGAAAAGTGGGTACAGTGCATGTCATGCGATCTATGGTCTCATTACGAATGCGCTGGATATGATGAAGGTGATTACGTTTGCGATTACTGCAAGCTTAATAAGTGA
- Protein Sequence
- MHESKGQMLSSLWTGIGCTRSSVSASAVKVRLLSQDGACTTPYGAIRFTTAFASRRKIDEMKGGSHPEKVQMINSVRVKHRNPKVMRPAKEESESSGSDETGRRMTTKKEAEKPKVAWNPELMILAVNAVRAKKMGSTRAARVFQIPKSILLKYLNEEMANEEIIVPCSTRGGGRKRVFTPEQEEDLKKYLLYVQERYFGLAKEEVKSIVLQFTKLKAITGFGPAGNPGFSWIKAFLRRHNSIVPQHPRELRKHSSVSKFFALIKREVEANHYSANMIFNVDETAFSIVHSKNPQFRLMKRQEQVLRAKKDSYLTVITCMGAAGNFVPPMFIFPRHKATSELMRGAPPGAVATCHPSGWVQLELFTQWFRHFLNATKPTKENPALLILDGQQSHTKNIEVIRLAQENHVSIISLPPLTLNKLQPVYKSFMDPLKTFYSEEVRKWMNQNLRPLSLDVVVELFSKAYLQVLDCNIGVKGFRDTGIMPLNPEMVSQDFPDLKDEDLEGAKVEKFLTHMMDHLSSPDELNSVKLKLKPSTSEAPDSQKYPSLREVLRLPVSEEFSEEDEESDTEYSVANIKSEIEVECMFCRQLQSEDATGEKWVQCMSCDLWSHYECAGYDEGDYVCDYCKLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391020;
- 90% Identity
- iTF_01391020;
- 80% Identity
- -