Smag000357.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000002.1:2337150-2337707[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 9.7e-07 29.2 0.0 2 38 9 44 8 51 0.87 2 2 3.7 3.5e+03 -1.4 0.0 31 44 110 124 108 125 0.79
Sequence Information
- Coding Sequence
- atgGCCAATAAGCTGCAATACTCAAAAGAGCAAATGCTGTCTGCCTTAGAAGCTGTCAGAAATGGAACGCCTATTGCAGCTGCTAGCAAATTGTACAAAGTTCCCAGAACAACTTTGTCGGATAAATATCATGGGAAAGTTCCCATTGAAAGGAAAATGGGACAGGTGTCAATTTTATCAACAGAAGAAGAATCTCAACTTGTGCAATGGATTTTTGATGTTGCAGCAATCGGATTTCCAGTAACGAAAGATCAACTTTTAGATAGCGTAAAGTTGCTATTAATTGAGTTAGACAAATCTTCTCTTTTCCCAAATGGAAGACCTGGGAGAACCTGGTACGAATCATTCCTAAAAAGACACCCAGAGGTTTCAAAAAGagttcctcaaaatttaactaaatctCGAGGTGTTATTACTAAGGAACAACTTCGTGGTTGGTTCAAAGAGGTCCATGATTACTTCACTGCAAACTTGTATCTTTCAATTCTTCTCGACCCTCGCCGGACCTTTAGCTGTGATGAAACAGCATTCTTTCTCTGCCCTAAAGGTGCCCattag
- Protein Sequence
- MANKLQYSKEQMLSALEAVRNGTPIAAASKLYKVPRTTLSDKYHGKVPIERKMGQVSILSTEEESQLVQWIFDVAAIGFPVTKDQLLDSVKLLLIELDKSSLFPNGRPGRTWYESFLKRHPEVSKRVPQNLTKSRGVITKEQLRGWFKEVHDYFTANLYLSILLDPRRTFSCDETAFFLCPKGAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -