Smag004456.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000015.1:12839735-12844688[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 1.3e-07 32.0 0.0 6 40 9 42 4 46 0.89 2 2 8 7.4e+03 -2.4 0.1 31 38 179 186 178 188 0.80
Sequence Information
- Coding Sequence
- ATGAACAAATCTGAAGATGTGGTAAAACTCGCAATGGAAGCTGTTGCAAATGGAATGTCGTTGAGAAAAGCAGAAGTCCTTTTTTCTATCTCAAAATCTGTACTTCATCGATATAAGAAGTACGGAATACCTATGAATATAAGCAAACAACGAGTTTACGTGAGAAACATTGATGAAGTATACAATACAGTggcttcaaGACGCGTTTATAGTTCATCCAACTGGACAGTTCCAACTTTGCCCTCAACATCCAGTGATATTCATCTGAGACGACTACGTTCAATGTCAACTATGGACACAATGATTCGATCGGGTGGAACTTCGTACGAGTATATTAAAAACACCAATTggaattctcgaaaatatcttTGTCCCGATTGTGGTCGAACTTTTACCTTAAAGGCCTCATTAATGAGACACAAGGAATTTGAATGTAATGGACGATTACTAAAAAATAACTTGGAACTTGGAGAAGACAAAAAACCAAAGAAGAAACATATTTGTGCCAGATGTAAACGAAGTTATGCTTTCTTCACTTCTTTGTGGCGACATCAACGTTACGAATGtggagttgaaaaaaaatttatctgccCTGTCTGTCGCGCTAAATTTGCACAGAAAAGTAATCTTGATCGGCACGTACGAACTCgtcactaa
- Protein Sequence
- MNKSEDVVKLAMEAVANGMSLRKAEVLFSISKSVLHRYKKYGIPMNISKQRVYVRNIDEVYNTVASRRVYSSSNWTVPTLPSTSSDIHLRRLRSMSTMDTMIRSGGTSYEYIKNTNWNSRKYLCPDCGRTFTLKASLMRHKEFECNGRLLKNNLELGEDKKPKKKHICARCKRSYAFFTSLWRHQRYECGVEKKFICPVCRAKFAQKSNLDRHVRTRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393858;
- 90% Identity
- iTF_01393858;
- 80% Identity
- iTF_01393858;