Smag022572.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010007168.1:1-1683[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-11 2.9e-08 34.0 0.0 3 40 17 53 15 57 0.90 2 2 3.8 3.5e+03 -1.4 0.0 30 39 242 251 242 255 0.76
Sequence Information
- Coding Sequence
- atGACGCGTAAGAGGAAGCGCACCTCGAACATTGCGAGATGGTCCAGCGACGACTTGCAAGCAGCATTAAAAGCCATAAAAGAAGGGAAACCAATGACACAAGCGTCCGCTTTATATGGAGTTCCTCGCACAACAATTTACAGAAGATTGAAGCGCAATAAATTTTCCGCCCCAAAAATGGGTCGCAAGGCTGTCTTCTCCACCGAGCAAGAGGAAATTCTAACCAACcatataaacaaattacaaCGCACTAGTCCCTTGACCTCTCAGCAAGTTAGAAAACTAGCTTTTGATCTCGctgaaaaattacaacttgATCACAATTTTAATAGAGAGAAACAGGAAGCTGGACAAGAATGGCTATCATCTTTCCTGAAACGAAACCCTCGTGCTCAAATTATTAGACGAGGTGAGAGAAGCCATGAGGCGAACGAAGTAAACGAAGTGAACACCGAAAATCCAAATTTCGATGAAGATCCCTTTACGAGTGAGACTGAgagtaaaattaagaaagaaaCGATATTTCTCAAGATGGAAATGGATTTTTCGGATGATTCAGAAACTCTCAATTCCTGTACTGATCCTTTGGAGAACATTTCCGAGAGTTATGAGAGCAACCGATGCTTAGAGAACTCAACGAGTGTCGTAAAAACTGAGGAGGAAGTTAAAGGAAAGTTTGAAATGAAGTTGAGAGTGAGGAAAAAGATTCTCTCAAAAGAGGAGAGATCTACTTTACAGAGTTGCGTTCACAAACAAATGAAGGTAGTGGATAGAAGTACCTTTCTTGATCAGCTCGAGAAGTCGAATCAGGTTGTGGTTGAAAAGGAAGATGATTTATCCGCATTGAAG
- Protein Sequence
- MTRKRKRTSNIARWSSDDLQAALKAIKEGKPMTQASALYGVPRTTIYRRLKRNKFSAPKMGRKAVFSTEQEEILTNHINKLQRTSPLTSQQVRKLAFDLAEKLQLDHNFNREKQEAGQEWLSSFLKRNPRAQIIRRGERSHEANEVNEVNTENPNFDEDPFTSETESKIKKETIFLKMEMDFSDDSETLNSCTDPLENISESYESNRCLENSTSVVKTEEEVKGKFEMKLRVRKKILSKEERSTLQSCVHKQMKVVDRSTFLDQLEKSNQVVVEKEDDLSALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -