Basic Information

Insect: Synergus laeviventris
Gene Symbol: ci
Assembly: GCA_032275145.1
Location: JAUESI010000036.1:6214672-6225004[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00021 0.029 15.6 0.4 3 23 464 487 462 487 0.94

2 5 0.071 9.7 7.6 0.1 1 23 495 522 495 522 0.86

3 5 0.00017 0.024 15.8 3.0 1 23 528 552 528 552 0.98

4 5 0.00039 0.053 14.7 0.7 1 23 558 583 558 583 0.96

5 5 4e-05 0.0055 17.8 0.4 1 23 589 614 589 614 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00021	0.029	15.6	0.4	3	23	464	487	462	487	0.94
2	5	0.071	9.7	7.6	0.1	1	23	495	522	495	522	0.86
3	5	0.00017	0.024	15.8	3.0	1	23	528	552	528	552	0.98
4	5	0.00039	0.053	14.7	0.7	1	23	558	583	558	583	0.96
5	5	4e-05	0.0055	17.8	0.4	1	23	589	614	589	614	0.97

Sequence Information

Coding Sequence: ATGAACGACATAATTACAATGAAAACATCGTCAACTTTGTTGGTCACGGCACCTTTTTTGTGGCGGAAGAAGAGCCTGTGCAGATTCTATTTTGAATCCTGTCAAGTGCCAGATGACTGGATGTATGGCGCTACTCGGTTCTTCATCATCTCTGTTGCCTCCTACGTCCATCCATCGCACTTGCTCTTCAGTTATTCCTCAGTTCTTCCCCTTAACTTAACTCTTGTACCATCCTATAAAGACCCTGTCTGCCTCTCTCCTCCCTGCATTTCCTTACGCCCATGGCAACGCTCATTATCCGCGAGTACAACGGCGCTCGGAAGTCCAGGGGGTGGAAACGGCGGCAATACTGGAGGTGGCGGAAACGGTGGTGACAGTGGCGGGGGCGGCAACAGAAGTGGGGGCGGAGGAGGCGGCGACGGGGGTACTGGAAATACGACTTCGAGTGGGGACTTCTTGTGCAGAAGTCATCCCCTTGCGGATCACTCACTCCTCCATTCCTATCGGGCCAACTACATGGACCAGATTTATCATCGTATCCAAGCCTCGCACAGTCCCAACCCCTCATTACACGGACTGGGTGGATTGGGGCCGGAGTACCTTTTGCATGCAGCGGGGCCTGGAAGTGCACTAGCGTCATcagaatttccattttcaattgATGGTTCCAGATTGGGCAGTCCTCGAGCATCTGCAATAAGAGCGAGTCGTAAGAGGGCTTTGAGTAGTTCACCATACTCCGATCGTTTTGATCGTTTTGATATCGACAGCATGATCCGAATCAGTCCCAACAGTCTAGCTTCTATAGTTAATGGATCGAGAAGTAGCAGTACAAGTGGCAGTTATGGACATCTTTCAGCCGCCATGAGTCCAGCACTGGGAATTCATCCAGGAATGACTCCGCACTTTCAGCAACTGCAAGCTCACCTGTTACGAAGTGCTGCTGCTGCGGCCCTTATTCCACCCCATTCTTTACCTCCGCCCTGCGCACCACCTCCACCCCAGCAGGCCCATCATCCCCATGGACATTCCCACACACATTCTCATTCCCATGGCCATGTCCACTCACATGGACATTCTCACAACCTCAGTCAGCACTCGCAGCTCTTCCCAGTGTCGTCACATTCCACGGGAACAGCCGCTATCGGTAATCACGCTGGAGGAGTACCCACGAAGAATGAAaTTTTGGAGACGTGTAGGAAACCCTTAGATGTTTCTAGTAGATCCATTAGTGCGGAGGCCGATACATCATCCAGAAGAAACTCGgctaaagtgaaaaaagaacCAGCCACGACAACGGCTACGACTACAATACCTCCAAGTCATCCACAAGGACTGAGTCCGAGTGAGGATCTTCGAGACGAACCTGGGGACTTCATTGAAACGAATTGTCATTGGAGGGATTGTGGCCAAGAGTTTCCATCACAGGACGAACTTGTCAAACATATCAACAATGATCACATTCACGCGAATAAGAAGAGTTTTGTTTGCGGATGGCAAGATTGTTCTAGAGaagaaaaaccttttaaagCTCAGTACATGCTAGTTGTTCACATGAGAAGGCACACTGGGGAGAAACCTCACAAATGCACTTTCGAAGGCTGCTTCAAGGCCTACTCGAGGCTAGAAAACCTAAAAACTCATCTGAGATCTCACACTGGTGAAAAACCCTACATGTGCGAATATGAAACATGTAATAAAGCGTTTAGCAATGCAAGTGATAGAGCCAAGCATCAAAATCGAACACATTCTAATGAGAAACCTTACGTGTGTAAGGCTCAAGGATGTTTGAAAAGGTACACAGACCCATCATCGTTGCGAAAGCATGTAAAGACTGTCCATGGAGCCGATTTTTATGCTAACAAAAAACATAAGGGCGGAACTGGAAGTGATGGTGGAGGCAATGGAGGTGGAGGTGGTGGAGCTAGTGGAGGTGGCGGTGGAGGTGTAAATGGCAGTGATGAGGCAGGAATTGGACACAGCAGTCCAAGCAGAAGTGAAGATCTTCATCCCAAGACTCCAAGCGTCTCCAGCCCCAGCGTCAAATCCGAAAGTGAAGCTAACAGTCCTCCTAGCATGATGCAGCAACAAGACAGTCCACTACACATAGCTAACTGCAACGATGACTCGAATGGTGTGAACATCGGACCAGTCTCTGATGTTGTTTTTGCCGACGAAGCATTCCACGAAGAACCAGAGGATCTGGACATTGCTGATCTTCCAGTTGCTATCAGAGCAATGGTTGGCGGACTAGAGTCACATCAGCAAGTTCAGCCTGTCTCGAGGAATCGCTTGAAGGGAAGGTTAAACGCGAAATCATCACTGTTGTCTCAGATCCCTCTAGGTGGCATGAGAGGAAGAAGCATGATGGGTCCCCAGGGAAATATTGGCGACCTCAATAAAAGAATTACTGATTCCAAGGTGGAAGGTATTCCGACTAGGCAAACGAGCCTTTCTGACTTGCAACTGAGACTCCAGCCTATGAGTGAACCTCGAAGAGATAGTACCAGCACAGTGAGCACTTACTACGGAAGCATGAAGTCCACTGACTTTGGAAGCAGAAGAAGCAGTCAAGCGAGTGGAGTCAGTGCCATGGGTCGAATTGGTCCCATGGGACCGGGTAGCTTCTATGATCCCATCAGTCCCGGTACTTCAAGAAGGAGTAGTCAAATGAGCACTGCGTCGAGTAGGATGCTTCCACCCGTTAACCATCAAGGACCTTACTCGACAAGCAACTTGGTTGTGCAAACTCAGAACATGTCTCTCCAGGGTCCCCAAGCCAATACCGAGTGGACTGCCTTAGGACAATGTCAACAACCTTCTGAAAATCGTAGGATGTCCGAACCAGCTCGTCAGCTAGGTCCAAGAGTCTCACCACCTATGCCTCCAAGACCAAGATCCGCCCAGTTGCCTGAATTTCATCCCAACCAAGAAGTAGTCTTGGACGAAGTTGGCGAAGGAGAGATGGTGGAGAACAAACTTGTAATGCCGGACGAATTTTTGCAATACCTCAATCAAGTCCGGACGGGTGGAAATCAAGTCAGCTACCGAGGAAGTCCATTACCGAATTGTCGATCACCTATTTGTACGAATCCACTACACTTCCAACGACAACAATCCCCTTGTAATTACAATCAACAGCACCAGGTATCTCGCTGTTTCATGGCCCAACAGTCCAACCCTCAGACACAAAACTGTAGCGAATATACGAGCAATTCAACCTTCTCTCAGTGTCCAAGTTCACGCATGAGTCAAGCTTCTGGTTACTGTCCACCTCAGAGCTTCGGGACACAGAATTGTTCCTCGCAAATTGCTAGTCCAGGATCTGTGCAGGTGATGTCACCAGGATCTCACTATGCCCCGAGTCATACGAGCGATCAACCAATGAATTCACCAGCAGCTGGAGCTTTGCCTCCACAACAAGGACCTCAGAATTTCCAGCCTAATACAGCACAGTTGAGTAGAAACTGTCCACAGAACTGTGAGCATAGTTACTACCCCAATGGTTGTCAATGTCAATCGGGAATCAACTGCAATAGTCAACCAATGAACACCCAACCTTGTTCTCCCATGCACACGCAGAATCCACAACCATGTTCAGCAGCTCATCTTAATAGACCAGTTGCTCCTTGTCAACCACTGTCTCCACAATGCCCTGAGCAACATCTACAAAATCATCGAACCGTTGGTAACATCGCTCACAATCAATGCGCTATGTCTCCTTCTGGTGATCAGTGTCATCAACCGATGCATGTCAGTCATAATGATGGACAGAGacctattaaaaattctaaacctCCAGGTCTAGTTCAATGTATCTCAGGTATTGTCGACCAGTGTCAACGAGTTGATCCAGTTTGCTCACCATCAGGACTAGCCAATCAGAAACATCCAACACCCATGAACGTCAACCTTCAGCAACCTCAGCGGATGCAAATCTCACCATGTCCACAAATGACTAATAATTGTGTGCATCCAAATCAGGCTTCCAATGTTCCCAAACAGACAAGAGTTTGTTCGCATGACAATTGTCAAGTGCAGTTTTCTTCTCATGGCTGTCatactttgaataataattcaccTAGGGTCAACTGTACCAGTGAATGTCGATGGGAATATGGTGCTGATCAGTGCTACCACAATCAACCTGGAAATAGACAGGAAATTCAGTGTCGAGACATTAGCCAATCCCAACAAGGAGCTTCGATGAAACCACCTCAAGGAATGCGGCAGGACTCTTATAGAAGAACTCTCGAGTACGTTCAACAATGTAGAAATTGGTCTGGAACTGATCAAGTTCACGAAGCCAGCGTCTCAAGCTCCACTCATCCAATGTCGTTGTTGCAACCTCTTCCGGCAAGCACTAATATGATACTTAATGACATGACGTCTTCTCTCAACTCTTTATTCGAAGAAAACCGATTTTTGCATATAATGCAATAG
Protein Sequence: MNDIITMKTSSTLLVTAPFLWRKKSLCRFYFESCQVPDDWMYGATRFFIISVASYVHPSHLLFSYSSVLPLNLTLVPSYKDPVCLSPPCISLRPWQRSLSASTTALGSPGGGNGGNTGGGGNGGDSGGGGNRSGGGGGGDGGTGNTTSSGDFLCRSHPLADHSLLHSYRANYMDQIYHRIQASHSPNPSLHGLGGLGPEYLLHAAGPGSALASSEFPFSIDGSRLGSPRASAIRASRKRALSSSPYSDRFDRFDIDSMIRISPNSLASIVNGSRSSSTSGSYGHLSAAMSPALGIHPGMTPHFQQLQAHLLRSAAAAALIPPHSLPPPCAPPPPQQAHHPHGHSHTHSHSHGHVHSHGHSHNLSQHSQLFPVSSHSTGTAAIGNHAGGVPTKNEILETCRKPLDVSSRSISAEADTSSRRNSAKVKKEPATTTATTTIPPSHPQGLSPSEDLRDEPGDFIETNCHWRDCGQEFPSQDELVKHINNDHIHANKKSFVCGWQDCSREEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYMCEYETCNKAFSNASDRAKHQNRTHSNEKPYVCKAQGCLKRYTDPSSLRKHVKTVHGADFYANKKHKGGTGSDGGGNGGGGGGASGGGGGGVNGSDEAGIGHSSPSRSEDLHPKTPSVSSPSVKSESEANSPPSMMQQQDSPLHIANCNDDSNGVNIGPVSDVVFADEAFHEEPEDLDIADLPVAIRAMVGGLESHQQVQPVSRNRLKGRLNAKSSLLSQIPLGGMRGRSMMGPQGNIGDLNKRITDSKVEGIPTRQTSLSDLQLRLQPMSEPRRDSTSTVSTYYGSMKSTDFGSRRSSQASGVSAMGRIGPMGPGSFYDPISPGTSRRSSQMSTASSRMLPPVNHQGPYSTSNLVVQTQNMSLQGPQANTEWTALGQCQQPSENRRMSEPARQLGPRVSPPMPPRPRSAQLPEFHPNQEVVLDEVGEGEMVENKLVMPDEFLQYLNQVRTGGNQVSYRGSPLPNCRSPICTNPLHFQRQQSPCNYNQQHQVSRCFMAQQSNPQTQNCSEYTSNSTFSQCPSSRMSQASGYCPPQSFGTQNCSSQIASPGSVQVMSPGSHYAPSHTSDQPMNSPAAGALPPQQGPQNFQPNTAQLSRNCPQNCEHSYYPNGCQCQSGINCNSQPMNTQPCSPMHTQNPQPCSAAHLNRPVAPCQPLSPQCPEQHLQNHRTVGNIAHNQCAMSPSGDQCHQPMHVSHNDGQRPIKNSKPPGLVQCISGIVDQCQRVDPVCSPSGLANQKHPTPMNVNLQQPQRMQISPCPQMTNNCVHPNQASNVPKQTRVCSHDNCQVQFSSHGCHTLNNNSPRVNCTSECRWEYGADQCYHNQPGNRQEIQCRDISQSQQGASMKPPQGMRQDSYRRTLEYVQQCRNWSGTDQVHEASVSSSTHPMSLLQPLPASTNMILNDMTSSLNSLFEENRFLHIMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00011508;
90% Identity: iTF_01391512;
80% Identity: -