Slae025384.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010020407.1:1-7812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3 4e+02 2.5 0.4 5 20 121 136 120 138 0.68 2 10 0.93 1.3e+02 4.1 0.1 1 23 298 321 298 321 0.91 3 10 0.043 5.8 8.3 0.2 1 23 387 410 387 410 0.97 4 10 0.00052 0.071 14.3 2.2 1 21 445 465 445 466 0.92 5 10 0.00011 0.014 16.5 1.3 2 23 468 489 467 489 0.96 6 10 3.2e-05 0.0044 18.1 0.6 3 23 493 514 492 514 0.97 7 10 0.078 11 7.5 2.3 3 23 519 540 518 540 0.95 8 10 0.59 80 4.7 3.8 1 23 547 569 547 569 0.97 9 10 0.01 1.4 10.2 0.3 1 19 575 593 575 596 0.91 10 10 0.00017 0.024 15.8 0.7 1 23 606 628 606 628 0.97
Sequence Information
- Coding Sequence
- ATGAATCAACCTGAAGAAATGGAAGACatgatagaaatagaaaatatcaaaCAAGAACCGCAAATAAAACGAGAAATAGACTTATACAATGAAGACCCGGACTACGTTTTAGGCGAAGAACCCACCAataattatcttgaaataaatGGAATGGAAACCATTACACATCAGGTTGTATCACTAAGTGTCGAGGATGAATCTCAAAATAAGAGTGAAGACTATTTTATACTCTCGAAAAATCCTTTCTGCGATATACAAATTTCGAATATCAGTTACACCAGGAATGCAGAACTCTGTGAGTTGAACAACCTAAAAGTACAAGAATCGATTCCTGAAAACCCGATtgacaaaatattgtttgaatgTGAGAAATGCAGTAGACCAAGCAAATACCTTAATGATCACACTTATACCAAACTGCCCAACCGACTAAAAGAAGCTAtagaaaatgaggaaatgaAACAGAATGGCCATCAAACTTACTCGTataCGGAAATTGCTATGAAAAATGAGGAAACCCTGTCAATTCTTAGAAAAGGTAATGACAATGATAAAGAAGAGTCCGAAACTTTCTTTGAAGATGGGGAAAGCCGTGAGGAAATAAAAGGTATTGCAAGTGGCACAGAAAAGTCTGAATCTTACCAACAATCTTTCTCGCAATATCTGAAAAATCGGAACCATTCAGAAATCGAAAacttaattccaaaaaatctaCACTTGGAGCGAGATAACGAAACTCGGATCATAGAGAGTCCTGTAAAAAAGAATAGACAAGAAATTCCTGCACCAATAACAACTCCAAGACGAATCACTGGATCCGAAAACTCGCAAAATCCCTTTTTAGTCAAAGAATCAATTCCAAGCAGTAAAATAGAGAAGATAACTTTTCTCTTCGAATGCATAGGCTGCGCTAGAAGTTTCGTAAGTAAGAAGGCAATTTTAGACCACGTGGAAAAAAAACACAGCGACGATTTTAGACTTTGGGATACTCTAtacataaaaaagaggttagAAGATCAAGAATCATCTACcgaagaaattcaagaaatctgTGCAACAAAGACTTCAAGAAGACTCATTCGACCCGAAGACTCGCCATATCTCTTTTCAGTCGAAGAATCCATTCCACGcaataaaatagagaaaatagtATTTCTCTTCGAGTGTGGAGGCTGCGCTCGAAATTTCGTGAGCAGGAAGGCAATCTTAGAAcacgtgaaaaaaaaacacggCGACGAATTTAGACTTTGGGAGACTTTGtacataaaaaagaaattagaagataaaaaatcgACCAGCACATCAATATATTCGGATCATTTACAGCTCCGTCACATTTGCAATAACTGtgataaaatattctcaaCTCAAAATCTCCTCGAAATTCACAAGTGTAAATTATGCTGTGGTATTTGCAACAAACCCTTCGTTTTCAGAAATAACTACATAGCGCATTTAAAAACTCATGAAAATGATTGCGAAATTTGCAAGAAGCAATTTACTTCAGAGTCGCTTTTAACAGTCCACCGGAAATCCGCTCATCCACAAGGAATTTGCTACGTTTGTCACAGGTGGTTTTCttcaaaaactcttttaaaagaacACAGGACAAAGGTTCATAACATTTctgtaattacttttttttgtttgatttgTGAAAAGAACATTcattcagagaaaaaatttcgCACCCATATGGAAAAACATGGCGATAAACGTCCTTTTTCCTGTCCTCATTGCGGGCGATTTTACGCTCGTTATTTGGCAATGACAGCACATAGTGAAAGATGCGAGGTATTCTATGAAACAAACGTCTTCGAGTGCGATATTTGTAACAAAGCATTTTACAATAAGGCAAAATTCATACCTCATATGAAACAGCATATcaatattaacaaaatatttgaggaagttgaaaaagatgaaaaagttCAGAAGCCTGTATTGAATAGGAAGGTTTCGAAGCATTTATTACAGGACATAATGACTTCTAAGTTTAAAGATTCGAAGAATTCTGAAACAAATAAAGTACTTCCAACTCCGTCtttgaatattaagaatttaaaaagtttacaatTCGGTCCAACGATTGATTGGCGCGAGAATTCGATACAAACATCTTTAACCAACATGCTTGAAAAGAGATGCGAAAGACAGGGAGGAAGAAAACAAATTACGAATCTAACTGAGCCACCCTTGCTTGCAGATAAAAGTTCGGTTCATTCTTCTGGAATGAGATTTGAGCTATTGAAAAGAGTGGAGAAGATCGAACTTAAGCAATCAGaacaaactatatttttagttgCTCAAGAACGGCCAGCAGGACGAAGTTGCGAAGAACAATCGATAGAGAAGTTTTTAATACTGAGACCGATCACTACAGTGCCAAGGAAAGTCGAGAACAGtataaacgaaaatataaaattagacCCGAGTTTTCAAGCTAAGTCACAAAAAGATCATTCGGCGTTTAATTCAGTGCCTGTGAACAGTGAAATCGATCCGCTGAATTTAGAAAGTCCTATAATCGTTTCTGTtagtgaaattataaattcaatatccGTTGATGAATCTGATCCGCTCGCCTTGGAAAATTCATCACTTCAGAATATTGACTCCGATCCGTTAGCTTTCGAGAATCCTCCATTGGATTCTGGAAtggatttgaaaatgtttatcgAATCTGAAAGTCAAGATGTTGAAACTAAAGATTTAGAAAACAAAGATTTGGGAGCTAAAAATTCGGACACTATAGACTATGAAACTATAGATTCTGAAACTGAGGATTCTGAAATTgaagattctaagaaatctTCAATAA
- Protein Sequence
- MNQPEEMEDMIEIENIKQEPQIKREIDLYNEDPDYVLGEEPTNNYLEINGMETITHQVVSLSVEDESQNKSEDYFILSKNPFCDIQISNISYTRNAELCELNNLKVQESIPENPIDKILFECEKCSRPSKYLNDHTYTKLPNRLKEAIENEEMKQNGHQTYSYTEIAMKNEETLSILRKGNDNDKEESETFFEDGESREEIKGIASGTEKSESYQQSFSQYLKNRNHSEIENLIPKNLHLERDNETRIIESPVKKNRQEIPAPITTPRRITGSENSQNPFLVKESIPSSKIEKITFLFECIGCARSFVSKKAILDHVEKKHSDDFRLWDTLYIKKRLEDQESSTEEIQEICATKTSRRLIRPEDSPYLFSVEESIPRNKIEKIVFLFECGGCARNFVSRKAILEHVKKKHGDEFRLWETLYIKKKLEDKKSTSTSIYSDHLQLRHICNNCDKIFSTQNLLEIHKCKLCCGICNKPFVFRNNYIAHLKTHENDCEICKKQFTSESLLTVHRKSAHPQGICYVCHRWFSSKTLLKEHRTKVHNISVITFFCLICEKNIHSEKKFRTHMEKHGDKRPFSCPHCGRFYARYLAMTAHSERCEVFYETNVFECDICNKAFYNKAKFIPHMKQHININKIFEEVEKDEKVQKPVLNRKVSKHLLQDIMTSKFKDSKNSETNKVLPTPSLNIKNLKSLQFGPTIDWRENSIQTSLTNMLEKRCERQGGRKQITNLTEPPLLADKSSVHSSGMRFELLKRVEKIELKQSEQTIFLVAQERPAGRSCEEQSIEKFLILRPITTVPRKVENSINENIKLDPSFQAKSQKDHSAFNSVPVNSEIDPLNLESPIIVSVSEIINSISVDESDPLALENSSLQNIDSDPLAFENPPLDSGMDLKMFIESESQDVETKDLENKDLGAKNSDTIDYETIDSETEDSEIEDSKKSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -