Basic Information

Insect: Synergus laeviventris
Gene Symbol: -
Assembly: GCA_032275145.1
Location: JAUESI010000008.1:3604874-3619046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.018 2.4 9.5 0.1 1 20 144 163 144 165 0.94

2 14 0.0079 1.1 10.6 2.2 1 20 189 208 189 210 0.95

3 14 0.0016 0.21 12.8 3.3 1 23 218 241 218 241 0.97

4 14 3.1e-05 0.0042 18.2 0.1 1 20 299 318 299 319 0.93

5 14 0.0077 1.1 10.6 2.4 1 21 343 363 343 364 0.95

6 14 0.68 92 4.5 0.4 1 19 372 389 372 391 0.75

7 14 0.22 30 6.0 2.3 2 20 413 431 412 433 0.90

8 14 1.4 2e+02 3.5 0.7 1 13 441 453 441 454 0.88

9 14 0.032 4.3 8.7 0.3 1 16 500 515 500 516 0.91

10 14 0.00024 0.033 15.4 0.9 3 21 540 558 538 559 0.95

11 14 0.19 26 6.2 0.4 1 23 567 590 567 590 0.95

12 14 0.0015 0.21 12.9 0.9 1 21 648 668 648 669 0.94

13 14 0.032 4.3 8.7 1.0 1 23 680 703 680 703 0.95

14 14 0.22 30 6.1 6.6 1 23 710 733 710 733 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.018	2.4	9.5	0.1	1	20	144	163	144	165	0.94
2	14	0.0079	1.1	10.6	2.2	1	20	189	208	189	210	0.95
3	14	0.0016	0.21	12.8	3.3	1	23	218	241	218	241	0.97
4	14	3.1e-05	0.0042	18.2	0.1	1	20	299	318	299	319	0.93
5	14	0.0077	1.1	10.6	2.4	1	21	343	363	343	364	0.95
6	14	0.68	92	4.5	0.4	1	19	372	389	372	391	0.75
7	14	0.22	30	6.0	2.3	2	20	413	431	412	433	0.90
8	14	1.4	2e+02	3.5	0.7	1	13	441	453	441	454	0.88
9	14	0.032	4.3	8.7	0.3	1	16	500	515	500	516	0.91
10	14	0.00024	0.033	15.4	0.9	3	21	540	558	538	559	0.95
11	14	0.19	26	6.2	0.4	1	23	567	590	567	590	0.95
12	14	0.0015	0.21	12.9	0.9	1	21	648	668	648	669	0.94
13	14	0.032	4.3	8.7	1.0	1	23	680	703	680	703	0.95
14	14	0.22	30	6.1	6.6	1	23	710	733	710	733	0.98

Sequence Information

Coding Sequence: ATGTGGGCGAATGTACTCGTGGGCTTCAAATCTTCGAAAACATCTGAAAaAATTTACTATCCGAGAACAAGAAGAAGATACACGATGAAAAATTCTGAGGATGTGGTAAAACTTGCAATGGCAGCTGTTGCAAATGGAATGTCATTGAGAAAAGCAGAAgtccttttttctatttcaaaatctgTACTTCATCGATATAAGAAGTACGGAATACCTATGAATATAAGCAGACAACAAGTTTACGTGAGAAACGTTGAAGAAGCATACACTACAGTgtcttcaaGTCGCAAGTACAACCCATCGAACTGGACGATACCAACTTGGCCAAGTTTATCGAGGGAGATTCAGCAGAGAAGACTTCGTTCAACTAGTTTCAACTTGGTAACAAATCCTTCCTTCAAGGATTCTATGAAATTTggaggaaaaaaatatccttgTTTCGATTGTGGAGGATCCTTTGGCCTAAGAGCGACCCTTATGCgtcacaaaaattttgaatgtgaTAAGGGTTTggttaaagaaattaataaatcttcCAGTGAGAAGCCTTCAATAAAGAAGAAGTACGTTTGTTCCAAGTGTCAAAGaagttatacaatttttaaaagtctttggCGGCATCAACACTACGAATGCGGAATTGAAGCGAAATATGAATGCGACTACTGTTTGCACAGGACTAAGTACAAGGACAGTTTGATGAAGCATATTATGTCAAGGCATATGCATAAATTTATAACGATTTCAACCAACTGGACAGTTCCAACATTGCCCTCAACATCCAGTGATGTTCAGCTGAGACGACTACGTTCAATGTCATCTATGAACACAATGATTCGATCGGGTGGAACTTCGTACGAGTATATTAAAAACACCAATTGgaattctcgaaaatatctTTGTCCCGATTGTGGTCGAACTTTTACCTTAAAGGCTTCATTAATGAGACACAAGGAATTTGAATGTAATGGACgtttactaaaaaataacGTAGAACTTGGAGATGACAGAAAACCAAAAAAGAAACATGTCTGTACCAGATGTAAACGAAGTTATGCATTCTTCACTTCTTTGTGGCGACATCAACGTTATGAATGtggagttgaaaaaaaatttatttgcccTGTCTGTCGCTCTAAATTTGCCCAAAAAAgtttcAATAAACATATTGAATTTGTTGGAGTGCCTAATGAGCAGAACTTTCTTCAAGAGGAAAATCGTCTTTCCAGTCGACTTCAATGTCCGACTTGTGGGAAATTCTATGCTTGTAAAAGGACTTGGCAGAGACATGTGCATTATGAATGTGGCAATGAAAAGCATTACAAGTGTCATTTGTGCCCTTCAAAATACAGACAAAGTGGAGTTTCAGACTTCAGCTGTGAAAATTCGAATGAAGGATTCGACGAAGAAGGAAATTTACTTgatgttcaaaaaattgaagacaCTTTTCAACGGCGAGAAGATGCCTCTTCATGGTTGCCTGAAGCAGACAAGCCTTATATTTGCTCAAACTGTGGGAAAGGCTACACTCATGCTTTTACTTTAAATCCCAATCCCCCACTTTTCTGCAATACTCTACCACCTCACGTTTGGAAGCAATGCAGTGTAGACCTTTTGTGCCTAAAATGTGGCCAGAAATACAGTGATAGGAAAAGTTTAAGAAAacatatgaattttttttgtcaggTAGAACCACGTTATCCTTGTCCCTATTGTTGGCACAAAGCTAGACTGAActctatattaaaaactcataTCGCCAAGGAACATAGTCACATTGTAGGAAGAaGCTTTGCTGAGTGGaataaacaacatttttccaaCCCACAGTCTGCAAAGTACAATCCTTTGCCAGACGAAAGGGCCAATGCTTACAACTTCAAGTTGGATAAAGTTGGAATGATATCAGCCCAGGGGGGTTCTCATATTATGCAAAAACGACACATGTGCACATTTTGCAAGAAAGCTTATCCACTGAAGTCGCTGCTGAGTCGACATATACAATCTGGCTGCAAGATGAATCCAAAATGCTCTCATTTTACTTGTACCTTTTGCCCCTACAAGAGTTTGTATAAGGCAAATATGGAACGACACATCAGAAATGTACACGACACTGgtggattgaaattcaaatgtgaTTTGTGCAACTTCAGGAGTAGTTACACATTTTGCGTTCGGAGACACATGAAAACGTTCCATCGTATAAATATGGCTGATATTCCAAATCAGTAG
Protein Sequence: MWANVLVGFKSSKTSEKIYYPRTRRRYTMKNSEDVVKLAMAAVANGMSLRKAEVLFSISKSVLHRYKKYGIPMNISRQQVYVRNVEEAYTTVSSSRKYNPSNWTIPTWPSLSREIQQRRLRSTSFNLVTNPSFKDSMKFGGKKYPCFDCGGSFGLRATLMRHKNFECDKGLVKEINKSSSEKPSIKKKYVCSKCQRSYTIFKSLWRHQHYECGIEAKYECDYCLHRTKYKDSLMKHIMSRHMHKFITISTNWTVPTLPSTSSDVQLRRLRSMSSMNTMIRSGGTSYEYIKNTNWNSRKYLCPDCGRTFTLKASLMRHKEFECNGRLLKNNVELGDDRKPKKKHVCTRCKRSYAFFTSLWRHQRYECGVEKKFICPVCRSKFAQKSFNKHIEFVGVPNEQNFLQEENRLSSRLQCPTCGKFYACKRTWQRHVHYECGNEKHYKCHLCPSKYRQSGVSDFSCENSNEGFDEEGNLLDVQKIEDTFQRREDASSWLPEADKPYICSNCGKGYTHAFTLNPNPPLFCNTLPPHVWKQCSVDLLCLKCGQKYSDRKSLRKHMNFFCQVEPRYPCPYCWHKARLNSILKTHIAKEHSHIVGRSFAEWNKQHFSNPQSAKYNPLPDERANAYNFKLDKVGMISAQGGSHIMQKRHMCTFCKKAYPLKSLLSRHIQSGCKMNPKCSHFTCTFCPYKSLYKANMERHIRNVHDTGGLKFKCDLCNFRSSYTFCVRRHMKTFHRINMADIPNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392690;
90% Identity: iTF_01392690;
80% Identity: iTF_01392690;