Slae009509.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000028.1:470911-477363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.7 7.8e+02 1.6 2.5 1 10 411 420 411 433 0.70 2 15 0.15 20 6.6 1.5 2 23 441 463 440 463 0.88 3 15 1.6e-05 0.0022 19.1 2.5 1 23 469 491 469 491 0.98 4 15 0.0052 0.7 11.2 3.6 1 23 497 519 497 519 0.98 5 15 1.3e-06 0.00018 22.5 1.0 2 23 526 547 525 547 0.97 6 15 9.4 1.3e+03 0.9 0.1 2 10 559 567 558 570 0.92 7 15 0.03 4.1 8.8 5.4 1 23 599 621 599 621 0.98 8 15 0.0053 0.73 11.1 0.2 1 23 627 649 627 649 0.95 9 15 1.6 2.2e+02 3.3 2.3 1 21 668 688 668 689 0.87 10 15 0.062 8.5 7.8 1.3 2 23 725 746 724 746 0.92 11 15 3.1e-07 4.2e-05 24.5 2.9 1 23 755 777 755 777 0.99 12 15 0.03 4 8.8 2.1 1 23 783 805 783 805 0.97 13 15 1.8e-06 0.00025 22.0 0.5 1 23 811 833 811 833 0.98 14 15 1.8e-05 0.0025 18.9 1.6 1 23 839 861 839 861 0.98 15 15 5.2e-06 0.0007 20.6 1.2 1 23 867 890 867 890 0.97
Sequence Information
- Coding Sequence
- atgAAAATCGTAATGAGAGATTCAAATGGTGAATTTATCGAGATTcctataaaagataaaagtgcTTGCAGGAGAATGCAACttgaaaatggaataaaaaatgactttaCTAACTTACCTCAAGCAGTTAATCAAACTACTTACAGGGTTATTCCTGCTTTATCAGAAGATTCTAAACGCTCGATAGAACTAGATAATGATGAAAACTCAAATCtccaatttaatttccttgaaTTATCGAATTTCGAAGCATTTGAAAAGAATGAAGCTATAATTACAGATAGTGTAATTAACAGtgtaaatatttctgaaatgcATGAAACTAATGGGCTGGCAGAATATCTTATACCTTCAACCGATATTGAAATAATGGAAGAATATCAGACTCCAGATTCCACAGaattagattttgaaaaggaaataCCCGAAGAATTAAACTTAATTGCAGCAAGTGATCTTTCTTCACCTTTATGTCGACTTTGTGCAAATCAAAGTGAAGAAATGCTTTGCATTTTTGGATCAGCGCAAATAGAAAAAGACATAgcagaaaaaattaacaaatatttaccaATTGAAGTGCAGAAAAACGATTCCTTTCCCAGAAATATTTGCCACCCGTGCCTTGAAAAACTAGacttaatttacaatttttacaaaacagTATCAGAATCCgaagcaatttttttgaaagctaaagataattctttagaaaaatcttcGACACCTATATACGCTGAGAAAAGATCCAACACTTTGAACACTGAAGTTATTGATTCTAGAGAAATTCTCTACAGCAAGACGATAAATGGAAATGAATTCAAGGTCATCGAGAATGAAGTGCAAGTTGAACATAATTCCGAGGCCTTCAAGATTTTGAGCGAAGTGGCatgtaaaaatgaatttgaagtaatCGAGGAGAATGAAGTTCAAGTCGCCGAAGATAATCCTGacgttttaaaagttttgaacgaAACTCTAGATAATTTTCAGGAAGATCTTTCTAATGAAGCCAGTGAAGTTTCTTCCAACATCACCGAATCAATAAGATGTCGGATTTGTAACGCGAAATTTTACGGGATGAGAAAATGTTATCTTCATTCAGCCAGTCATTCATCCACGAATTATTATCCTTGTAGTATTTGTAAAAGTGACTCACCTTCTCTGCAAAAGTGGAGAGAACATTTTGCAGAACACAGCTCtattaaattacatgaaaGAAGAGTATTGAATTACGAATGCAAAATTTGTAAGAAGAAACACGTTTCCGAGACAAGACTGAAGTTCCATCTTCAATTCCATGAGCCTGGCGTCAAGCCTTGTTACTGTGAGAAATGCGACAAATTTCTTACTTCCGAGTCGGTACTTTATAATCATTCAGTGATGGTCCACATGAAGTTTAGGGAATTTTGCTGTGATATCTGCGGCAGTATATTCAGATCACAACAGCAGTTGAATGTTCATCAACGAAAACATAAAAACGAAAGACCCTATGAGTGTGACATTTGTTCTAAACGATTCCTATCCATGGATTGTCTCAGAAGGCACAGAAAACTTCATCTTCCTAATAAACCTCTTCAGTGCGAGGAATGTGGAAAGCGATTTGACCGAACTAATTCTCTCACAAAGCATCTTCTCACTCATCAAGTTGCAGCGAAGCAGTCAATTATCTGCCAAGTTTGCAAACTGTGCAATGAAGTTTTCCTTAGCGCTTTTGAAACTGAATTTCATCTTAAAATCTGTCCCGTATCAGGAGATGATTCAGTTGAGATTGAAGAGAAGAAGCTCTACGCTATCTACagatGTGAATTCTGTCAGCGATGTTACACCTCCATCGACTTTGTGAAGAATCATCGAAAATCTCATTCAGGCCCCACGCCTTATGTCTGCACAATCTGTAATGTGACCTACGCAACTTACAATCAAGTAACAGCACACAAAAGTGCTCACAGAAAATCAGTCCAAGGTGTTCGGTCGAAAGAGATTACAACCATTACAAAGTTCTTTTTTTGCGAGTATTGTGAGAAAGAATTTCTGCACTTCACTAGCATGAATTTACATAGGAAATCTTGTGCCAGGGCTAAACACTGGACTTGTTACTGCTGCTCTTCCGTGTTTTTAAGCCAAATCGAATTGCGTAAACacaagagaagaaaagaacCTGGTGAGGAGTGGCCCTGTGATAATTGCGAGAGGACATTTGATAATTTCTGTGGTCTTATATCGCATAAAGAGTTTCATGCTAAAGCACAAGATCGGAAGCTTTTTAAGTGCTCTTATTGCGGAAAAGACTTCCAACAAAAAGCTCATCTGACTGTTCACATAAGAAGTCACACCGGTGAAAAACCTTTTGCATGTGATTTATGTGATAAGGCCTACAGTATTAAATGCGATAGAGATAATCATCGGAGGACCCACACTGGAGAACGTCCCTTCAAATGCACGACGTGTGATAAGGCATTTACGAATCCAGCTAGACTTCGAGAGCACATGATAAATCATTCTGATCATCGGCCTTATCCATGTCATATCTGTGatcagagatttaaaaagtccAGTGCAAGAAAAGTTCACATGCTTATTCATACTGGAGAGAAACCGTTTCAGTGCGACATTTGTGGTATCAATTTCCGAAGATCTGGAGATATGAGGAGGCACAAAAAAAGTCGGCATACTTCAGAACTCCAGGTCGACAATACGATCTGA
- Protein Sequence
- MKIVMRDSNGEFIEIPIKDKSACRRMQLENGIKNDFTNLPQAVNQTTYRVIPALSEDSKRSIELDNDENSNLQFNFLELSNFEAFEKNEAIITDSVINSVNISEMHETNGLAEYLIPSTDIEIMEEYQTPDSTELDFEKEIPEELNLIAASDLSSPLCRLCANQSEEMLCIFGSAQIEKDIAEKINKYLPIEVQKNDSFPRNICHPCLEKLDLIYNFYKTVSESEAIFLKAKDNSLEKSSTPIYAEKRSNTLNTEVIDSREILYSKTINGNEFKVIENEVQVEHNSEAFKILSEVACKNEFEVIEENEVQVAEDNPDVLKVLNETLDNFQEDLSNEASEVSSNITESIRCRICNAKFYGMRKCYLHSASHSSTNYYPCSICKSDSPSLQKWREHFAEHSSIKLHERRVLNYECKICKKKHVSETRLKFHLQFHEPGVKPCYCEKCDKFLTSESVLYNHSVMVHMKFREFCCDICGSIFRSQQQLNVHQRKHKNERPYECDICSKRFLSMDCLRRHRKLHLPNKPLQCEECGKRFDRTNSLTKHLLTHQVAAKQSIICQVCKLCNEVFLSAFETEFHLKICPVSGDDSVEIEEKKLYAIYRCEFCQRCYTSIDFVKNHRKSHSGPTPYVCTICNVTYATYNQVTAHKSAHRKSVQGVRSKEITTITKFFFCEYCEKEFLHFTSMNLHRKSCARAKHWTCYCCSSVFLSQIELRKHKRRKEPGEEWPCDNCERTFDNFCGLISHKEFHAKAQDRKLFKCSYCGKDFQQKAHLTVHIRSHTGEKPFACDLCDKAYSIKCDRDNHRRTHTGERPFKCTTCDKAFTNPARLREHMINHSDHRPYPCHICDQRFKKSSARKVHMLIHTGEKPFQCDICGINFRRSGDMRRHKKSRHTSELQVDNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -