Slae016278.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000038.1:6323448-6325709[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.028 3.8 8.9 2.6 4 23 203 225 201 225 0.86 2 10 0.046 6.2 8.2 0.2 2 23 239 260 238 260 0.96 3 10 0.005 0.67 11.2 0.8 1 23 287 309 287 309 0.98 4 10 1.8e-05 0.0025 18.9 2.0 1 23 315 337 315 337 0.98 5 10 5.7e-05 0.0077 17.3 3.7 1 20 342 361 342 364 0.95 6 10 4.7e-05 0.0064 17.6 1.6 2 23 370 391 370 391 0.98 7 10 5.7e-07 7.7e-05 23.6 0.8 1 23 397 419 397 419 0.97 8 10 9.6e-05 0.013 16.6 1.6 1 23 425 447 425 447 0.97 9 10 1.1e-05 0.0016 19.5 2.6 1 23 453 475 453 475 0.99 10 10 4.4e-07 6e-05 24.0 0.8 1 23 481 503 481 503 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAGATAGTTGTGTTGGACGCAAAATTGGACaatatttgtagaatttgCTTGCAAAAATGGTGTGTCATGTcaccaattttcaaaaagaaaaatgaatctgATGAGATTTTAACTTTGGCAGATAAAATATCATCCATCGCGCAGGTTCAGgtAGAAGAAGGCGATGGTCTACCACAATCAATATGCCATTCGTGCCAGCTACAAATTGATAAATACTATGACTTTCGAGTTCTCGTGGAACTTTCAGATCGCACTTTACGATCATATTTACCATTAAAAGAAGAAGcgattgatttaaatattgtggATAAGCCAGAGGACTATCAAAAATTTACTACAGAAAGTCTTCCAGATGACGAGTTTAATCTAGGCGGAGTAAATACGATAATAGTTCCAACAGAGGAAGGCATGGAaGTATGGAAAATCTGCGATATAAACAAAGAAGGAGAAAATCTAGAAGAAGACTCTTATCACAATCAAGGTTTAAGCAATTTTGAACAGGTCGGAGATACGAGTCAGTTAGGAATAGAAACAGGTGTAATGGATCCGGAGATGTGTTTGATAGAATTCTctgaaaggaaaacaaaagTCCAACGTTGCCAAAAATGTATTCGATGTAAGGAGTTTTTTCGTGATGAGGAAGAACTCAAAACTCATTTGCAAGATCACGCAGTGGAGGACGAAGAAAATAATCTTGGTGTTAAAATAAAGTGTCAGCTTTGTTTCGAATcctttttatcattaaatgCCCTGAAGATTCACATACAAGATCATGTCTTCGACCCCAAAACAATAACTTCCAAATTCACTCTCAAATCAGATGCGGAAGATCCACAACAAGTggataagaaatattattgttcTCAGTGTAATCAGGAATTTCCTACTATGGAAGAGCGTTCTGATCATATGAGTCGACACTCTGAAAAGAAGAACTTCAGATGTGGTGTATGTAGCAAAGTCTTTTCAAGAAACTCTTCGAGGAAGAGGCATGAATTGAGGCATATAGAAAAACGTTTTGAATGTCCTCAGTGTGggagatttttcaagaaaagatcagaattaaggtaCCATATTAGCTGCCACGTTGACACACCACCCACGTGCGAAGTTTGCCAGAAACAGTTCCAAAATGCTCAGTCACTGAAACTACATATGAAGCGACACACGGGTGAAAGTACATTTGCTTGCAAAACATGTGGAAAAAATTACTACTCGAATTCTGAATTAAATAGACATATACAGATACATCTGGGTAGACGAGATTATCCATGCTCTCTGTGTAACCAATCTTTCTTCTCTAAACCTGAACTGACAAGGCATAGCAAATATCACAAGGGTGATAAGAAATTCAAGTGTACTATTTGCTCGAAATCATATTTCGAGTCTGGTCATCTTAAAATTCACCTTAGGATACATACCGGCGAAAGACCCTTCAACTGCGACATTTGTTCCAAAGCCTTTATTTCTAAATCGAAGCTAATTAGACATCAGAAAATTCACTTCAAGAAGGGAGTtaagaaaaacaataaaattgttgaaataaagAGTGACATTGAATTTGTAGACATTTGtgaatttgtgaaatattaG
- Protein Sequence
- MEQIVVLDAKLDNICRICLQKWCVMSPIFKKKNESDEILTLADKISSIAQVQVEEGDGLPQSICHSCQLQIDKYYDFRVLVELSDRTLRSYLPLKEEAIDLNIVDKPEDYQKFTTESLPDDEFNLGGVNTIIVPTEEGMEVWKICDINKEGENLEEDSYHNQGLSNFEQVGDTSQLGIETGVMDPEMCLIEFSERKTKVQRCQKCIRCKEFFRDEEELKTHLQDHAVEDEENNLGVKIKCQLCFESFLSLNALKIHIQDHVFDPKTITSKFTLKSDAEDPQQVDKKYYCSQCNQEFPTMEERSDHMSRHSEKKNFRCGVCSKVFSRNSSRKRHELRHIEKRFECPQCGRFFKKRSELRYHISCHVDTPPTCEVCQKQFQNAQSLKLHMKRHTGESTFACKTCGKNYYSNSELNRHIQIHLGRRDYPCSLCNQSFFSKPELTRHSKYHKGDKKFKCTICSKSYFESGHLKIHLRIHTGERPFNCDICSKAFISKSKLIRHQKIHFKKGVKKNNKIVEIKSDIEFVDICEFVKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01390559;
- 90% Identity
- -
- 80% Identity
- -