Slae015183.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000036.1:10605252-10609050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 16 6.9 0.9 1 23 267 289 267 289 0.93 2 12 3.2e-05 0.0044 18.1 1.3 1 23 294 316 294 316 0.97 3 12 0.00021 0.029 15.5 1.1 2 23 326 347 325 347 0.97 4 12 1.4e-05 0.0018 19.3 7.6 1 23 443 465 443 465 0.98 5 12 0.0015 0.2 12.9 1.1 1 22 470 491 470 494 0.90 6 12 1.5e-05 0.002 19.2 0.9 1 23 532 555 532 555 0.94 7 12 7.1e-08 9.6e-06 26.5 0.9 1 23 587 609 587 609 0.99 8 12 0.00016 0.022 15.9 4.0 1 23 623 645 623 645 0.96 9 12 0.00056 0.076 14.2 6.7 1 23 651 673 651 673 0.98 10 12 0.00024 0.033 15.4 1.4 1 23 679 701 679 701 0.98 11 12 9.5e-05 0.013 16.6 6.6 1 23 707 729 707 729 0.97 12 12 0.00021 0.029 15.5 0.3 1 21 735 755 735 756 0.93
Sequence Information
- Coding Sequence
- ATGGATGATATGGAAATTGAAAACGAATCTATTTATTTGCTGCAAAATGCGGATGGAATTTGTCGGATGTGCCTAGACTTGAATCAGAGTAACCAATGCATTTTTCTTGCAAGCAACTCTGACCCCGAAAACACAAACGCCTTAGATTTGGTTAAGAAATTAATCGTCCAAGGTGGTATCGAAATTGTAGAAGATGACGGTCTTCCATCTAGCATCTGTCTAACATGCCTTTCAAAAGTTAATGCAGCTCATGAATTTAGGGAGCAGTGCCAAATAGCAGATAGAACCCTGAGAAAAGCCTATGGAAAGCCtcagaaacattttaatttagactCATCAGTATCACAAAAACATCAGTCATCACAAACAGaaggtaaaattttattattcgttAAAGACGAAGAAGAGGAAGCTGAAAACCCTAATTCTGCAGAAGATCAGTCCAACAGTAATTCAAAAACAATTGATGAAGTTGGCATAAAATACCATTATCCTTTTAATCCTGAAGTAAATAGTAATGAGGCATTTGTGACTAACGAGTCATCGAGCAAAGGTGACACTTCTCAtgtggaaaaagaaaatgccccattaaaaagagaaggttgtaaaactagaaaaatgtCTATGTTCAAGAGAGTGACGTCTAtggaaaacttaaaaaatgtcaaggaaaGACAGAGAAAGTAcattaagaaaaatacaaattcgAAGTCTGAATCAACTGAAATGGACTTGCCTGTAGGAACAAGGATGCGAAGTGCTAGTCAAAGATTAAGCAACGAAGAATCGGAATCTCGTTATGAGTGCATCACATGTAAGAGCACTTTTTCCACTAGGCGAGCTTTAGACAAACACTCATTGATTCATGATGACAAAAAGTTCAAGTGTGAAAAGTGTGATAAGGAATTCTTCAGGCCTGACCAACTGTCTGAACATTCCAAGTTGCATCAGTCGAAAGAAAAACCTAAACCcgtACGCtgtaaaatttgtgaaaagaatttcaaaaagacaGATACGATGGTGAGACATTTAAACATTCACAAGAGAGCGAATCCTAAAGAAGTGTTTTCCATCCTCAAGGAAATCAgggataaaagaaaaatagagaattctattgaaattgttgaagAAAATGAACAGTTTATAAATAACGAATTAATTGACGAGGAAACGGAAACATCATCAAAACAAGCGGACAATATTTGCACTAAGGATCTCAGAAAACGTGTGACAGATTCTCAATCTAAGCAGGATAACCGatctaatattttcaattcggATTTTGATAGTGAAAATGAATCCGATTCCGTAAACGATATGTCCCTATTTCGTTGTAAACATTGCACAAAGTGTTACACGACCGAAAAATCTTTGCAAAGGCACATGCTGGTacatgatgaaaaaaaattcgtttgcAATGTCTGCAATATGAAGTTTTTCAGACCGGATAGACTGAAAAGTCATAGAGACAGATATGGACACAATGAGGACAAAGTTTCTGAACCCGAGAAGCCTCCAGATGACAAGTCCGCCAttaaactaattaatagtTGGATAAGAGAAGAGTTAGACTCCGACAATGAAGGCAAGGGTTTTCCATGTGATCTTTGCGGAAAATCCTATGTCACCAAGAAGTCCTTAGCTAAACATCGAACAAACACACATGAATCTCAAGAAGATTTTTGCAAAAGCTGTGGTACTGAATGCGTCTGCGATGATAAGCCAAAAGTTCAGGTAAAAGCAGAGAAAGATAAAATCTACACATGCGATGAGTGCggtaaatcatttgaaaaagagAGCAAACTGCAAAAGCATTTAAGAATCCACGAACGCGCTAAAGAACAGCAGGATACAAACTTTAAGAGATTCCTCTGCCACATCTGTAGCAAAACTTTCAGACAAAATACAGGACTGATGTTCCATATGAGAACGCACACAGGTTACAAACCGCATGTTTGTAAACATTGTGGTCGTGGATTTACTTCAAATTCTAATTGTATTAACCACGAAAGAACGCACACTGGAGATAGACCCTTCGTTTGCCAATATTGTAGCGCCGCTTTCGCCAAATCTTGCACATTAAAAGCACACATCACAACGCATACCGGAGAGGCGAATTACCATTGCAAAACGTGTGGTAAATCTTTCAGAAGGTTGAAGTACTTGAAGGAACATAAATTCACGCACACTGGCGAGAAGCCTTATGCTTGTAAGATATGTGGCACTGCCTATAGTCACTCAGGTAGTTTATTCGTACacgagaaaaaatgtaaagccCAGTATAACAATTTCCAGTCCGCTTCCTCTCAAAACGCACAGAACTTTTGCCAGTCACAGGCCAATGTTATGACAACATCTCCTATCGTCACGCCTTTAATGACGACATTACCTCCGACTCATCATATGGAAAGTATGAACAATCCCTTAGGTGCGCaagctaataaaaattatatggaGAGTGTTCAGAGAATGAATGCTCATGCTGCTGCGGCCGCTGCAGTTGGAAATGCAGGATTGCATGTTCACACGAATACAGATGTATCTGATATGTCATCTGCGGTGAGGAACTTCGCTATAATTGGACAAATGTTCCATTAG
- Protein Sequence
- MDDMEIENESIYLLQNADGICRMCLDLNQSNQCIFLASNSDPENTNALDLVKKLIVQGGIEIVEDDGLPSSICLTCLSKVNAAHEFREQCQIADRTLRKAYGKPQKHFNLDSSVSQKHQSSQTEGKILLFVKDEEEEAENPNSAEDQSNSNSKTIDEVGIKYHYPFNPEVNSNEAFVTNESSSKGDTSHVEKENAPLKREGCKTRKMSMFKRVTSMENLKNVKERQRKYIKKNTNSKSESTEMDLPVGTRMRSASQRLSNEESESRYECITCKSTFSTRRALDKHSLIHDDKKFKCEKCDKEFFRPDQLSEHSKLHQSKEKPKPVRCKICEKNFKKTDTMVRHLNIHKRANPKEVFSILKEIRDKRKIENSIEIVEENEQFINNELIDEETETSSKQADNICTKDLRKRVTDSQSKQDNRSNIFNSDFDSENESDSVNDMSLFRCKHCTKCYTTEKSLQRHMLVHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHNEDKVSEPEKPPDDKSAIKLINSWIREELDSDNEGKGFPCDLCGKSYVTKKSLAKHRTNTHESQEDFCKSCGTECVCDDKPKVQVKAEKDKIYTCDECGKSFEKESKLQKHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKHCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNFQSASSQNAQNFCQSQANVMTTSPIVTPLMTTLPPTHHMESMNNPLGAQANKNYMESVQRMNAHAAAAAAVGNAGLHVHTNTDVSDMSSAVRNFAIIGQMFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01390545;
- 90% Identity
- iTF_01394579;
- 80% Identity
- -