Slae002596.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000003.1:11515884-11520101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.066 9 7.7 0.4 1 23 118 141 118 141 0.91 2 17 1.4e-05 0.0019 19.3 2.2 1 23 147 169 147 170 0.95 3 17 7.3e-05 0.0099 17.0 0.3 2 23 176 198 175 198 0.95 4 17 0.0035 0.47 11.7 3.3 1 23 203 226 203 226 0.96 5 17 1.3e-06 0.00018 22.5 1.3 2 23 233 255 232 255 0.93 6 17 1.5e-06 0.0002 22.4 1.3 1 23 261 283 261 283 0.97 7 17 0.004 0.55 11.5 0.3 5 23 292 310 290 310 0.97 8 17 7.1e-05 0.0096 17.0 1.1 3 23 459 480 458 480 0.95 9 17 0.46 62 5.1 2.2 1 23 486 509 486 509 0.96 10 17 0.00054 0.073 14.3 0.8 2 23 578 600 577 600 0.94 11 17 0.13 17 6.8 6.9 1 21 606 626 606 629 0.94 12 17 0.34 47 5.4 0.1 1 23 755 778 755 778 0.93 13 17 1.3e-06 0.00018 22.5 1.8 1 23 784 806 784 806 0.98 14 17 0.095 13 7.2 1.2 2 23 812 834 812 834 0.95 15 17 0.069 9.4 7.6 1.4 1 23 839 862 839 862 0.94 16 17 1.1e-07 1.5e-05 25.9 0.4 3 23 871 892 869 892 0.96 17 17 1.2e-06 0.00017 22.6 0.3 1 23 898 920 898 920 0.96
Sequence Information
- Coding Sequence
- ATGGAACCAAAAGAAGCTCCTATGAAGTTAAAATCTAGATTGCAAGTAAGAAAGGATATCTTGAATTCATTGACAAGTATTAACTTCATAGATGCCCTAAAGAGAGACACTCTTCACGAGAAAGCCACTTCATCATCAAAAACTTCATCTGTTCGAAGAAAAGTTATCCAAAATAAGAAACCAGATTTACAATCAAAACCCAAATTACAAAGAGCACCAAAAAAACCGAAAGCACCTAGAACTAAAAACATCGACTCAAATCAACCGCCGAAACAGAGAAGAAGGAAGAAAGCATCTAATGAGACATCTGGAGAAAACAATTCTAAAAGTATTGCTAAAGAGAAAGTTGAATTCATTTGCTCAGGCTGTGGCATAATATTTGCGAAAAAGGAAATACTCCACGCTCATTTTATACGAAAACACACCGAAGGGTACAACTTTTCTTGTGACACATGTGGTAAACAGTTTAAACTTAAGGGTGATCTCTCAACTCACATTCGACTACATCACTTAGAACCACCTACAGTCTGCGATGTATGTGGTAAAACCTACAAAAACAGCCTTTCTCTCTATGTTCACCAGAAATATGCTCACTATAAAGCAAGATTTGAGTGCCAGTTTTGTAAGCGATGTATGGTTACTCAAGAAAATCTTAATCATCATATTATAGTGATGCACGGACATGTACACATGTTGGTTTGCGAAGAATGCGGAAAAACATTTACCAAAAAAGTCAATCTTCGAAGACATGTTCACAATGTTCATACTAATACTAAGGCGTACATTTGCCCAGTGTGTAATAAAGCTTTTTCTCAAACATATCACTTGAGACAACATCTGCTTCTACACACGGGTAAGCGTATATATCGTTGCGAATGTGGAAAAGAATTTGCACAAAAACCGGGACTTTTGAGCCACAGAAAAAGTCATCCTGGTGAACATCCTCCTTTACCGATAATTCGATTAGATCAagttcttaaagaattttttaacaaGAAATGTGCAAGTGCAAAGCAAAGGCCACCATCTCTTCTCAGACTGCAAGAAAGTCTCGAACAGCCTCTCAGGACCACTCAAGCATCTAAAACTATACATAATGTCGTTTCTACTTTTGTTCCAATATCGAAGAGGATCCCAACTTACGCATTTATGAATCTTAGTGAATTCGAAGATTCTTCAAGATTGGTAATAAGCAGTACAAGTGAACCTGTTGCGGAATCGGATCCACTCTCACTAAATTATTTGGAACAACAtcatcaaaaagaaaatttaacgGGAAGTCCACAATCGtcagaaaacattttaaatcaagaTTCACAAACGAAGAAGATAACAAGACTAAGATATAAAGACTTTAATCAGAGCGACCGGAATtgcaaaatttgtaataaaaagttCGCGAAACCTAGTGATCTGAAGCTTCATAATATGCGTCTACACACGTGGGAATATAAATATCGCTGCGGAAAATGTTCTAACCAGTTTAAGATTGCTAAAGACCTCACCTTTCACATGAAGCAATTTCATCCAAGCTCAATGCCAATAGAAGCTAATTGCAATTCTAGAAAAAGGCAACaagaatctgaaaaagttcAACAAGAGCCTACAGAAAGTCAGCAAGAGACTAAAAAAGTTAAACAAGAGGAACATAATTCAGAAACTCTGCCATCTACTGTTATCGAAGATTCACTTCCAAAGAAAACAAAGCGAATACATAAAAACTTAGAGCTGCCTTGTACcatctgtaataaaaaatttggcaGAGTTTATGGTCTGAAAGTCCATCATATTCGTATGCACACAacggaatttaaattttcctgtAACCTCtgcagtaaaaaatttaagcttCTAAAAGATCTCCACAGACATGAAAGGTGCTTTCATGCAAAAGACGTTACAAAAAGAACCCAAAGAAATTCGGGAAAAGGGCAACAAAAAGATCCAGTTAAACAAGTTGAGCTGAACAAGATGAAATCTCGTAAAGAAGAACAAGAAAAGCATCTCAAGTCTTCGAAGTTAGTGTCTCGTCTAACCTTGAAGAAGATTATCTTTAAATCGGTTGGTAGTGTCAACTTCCAATCGAGAATAATCAACGAAATAAACTGCGTGAAAgcttcaaacaaaaatatacagaAGGCTCATATTAAGCCAGGAAAATCATCAAAAACGTTGGAAGATTGTACGGTTAATCTTCCGTCAGCATCAACCGAAAATAATCTTACACCTCCAGAATCTACAAAGGCCCAACCAATACCTGAATTCATTTGTGCAGACTGCGGTGCTAAGTTCcttcaaaaagtaattttaaaaacccatATTGCTCGCAAACACTCTGAACAATACGATTTTTCTTGCAAAGAATGTGGTAAAAAGTTCAAAGTCAGAGGAGATCTCTCAACTCACATGAGGTTTCACCGAGAACCACCTGCAGTTTGTGATGCATGTGGAAAAACTTGCCTGAACAGTCGCTCCCTTTACTTACATCAGAGATATGCTCATTACAAGACCGCATTTCCTTGTTCTCTTTGCAAACGGTTTATGGCTACTCAAGAAAATCTAGATCAACACATACATCAGCAACATACACAAGAAAAGGAGAGAGTGATCTGTGACGAGTGCGGTAAAAGTTTTTCCACCAAAAACACTCTTCAGCGACATGTTCGATCTGTACATTTGAAAGTCAAAACATACTTGTGTGAGATATGCGACAAATCATATGCTCGATTGTCTGAGTTGAGGCAACATTTACTTACTCACACTAGAAAAATATGTGGATAA
- Protein Sequence
- MEPKEAPMKLKSRLQVRKDILNSLTSINFIDALKRDTLHEKATSSSKTSSVRRKVIQNKKPDLQSKPKLQRAPKKPKAPRTKNIDSNQPPKQRRRKKASNETSGENNSKSIAKEKVEFICSGCGIIFAKKEILHAHFIRKHTEGYNFSCDTCGKQFKLKGDLSTHIRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECQFCKRCMVTQENLNHHIIVMHGHVHMLVCEECGKTFTKKVNLRRHVHNVHTNTKAYICPVCNKAFSQTYHLRQHLLLHTGKRIYRCECGKEFAQKPGLLSHRKSHPGEHPPLPIIRLDQVLKEFFNKKCASAKQRPPSLLRLQESLEQPLRTTQASKTIHNVVSTFVPISKRIPTYAFMNLSEFEDSSRLVISSTSEPVAESDPLSLNYLEQHHQKENLTGSPQSSENILNQDSQTKKITRLRYKDFNQSDRNCKICNKKFAKPSDLKLHNMRLHTWEYKYRCGKCSNQFKIAKDLTFHMKQFHPSSMPIEANCNSRKRQQESEKVQQEPTESQQETKKVKQEEHNSETLPSTVIEDSLPKKTKRIHKNLELPCTICNKKFGRVYGLKVHHIRMHTTEFKFSCNLCSKKFKLLKDLHRHERCFHAKDVTKRTQRNSGKGQQKDPVKQVELNKMKSRKEEQEKHLKSSKLVSRLTLKKIIFKSVGSVNFQSRIINEINCVKASNKNIQKAHIKPGKSSKTLEDCTVNLPSASTENNLTPPESTKAQPIPEFICADCGAKFLQKVILKTHIARKHSEQYDFSCKECGKKFKVRGDLSTHMRFHREPPAVCDACGKTCLNSRSLYLHQRYAHYKTAFPCSLCKRFMATQENLDQHIHQQHTQEKERVICDECGKSFSTKNTLQRHVRSVHLKVKTYLCEICDKSYARLSELRQHLLTHTRKICG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -