Slae002595.2
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000003.1:11513110-11515314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.2e-06 0.00098 20.2 2.2 1 23 106 129 106 129 0.97 2 15 0.00012 0.016 16.3 4.3 1 23 135 157 135 158 0.96 3 15 2.6e-05 0.0035 18.4 0.8 3 23 198 219 197 219 0.95 4 15 0.0022 0.3 12.3 0.6 3 23 227 248 225 248 0.97 5 15 0.00041 0.056 14.6 0.8 2 23 353 375 352 375 0.94 6 15 0.0088 1.2 10.5 6.9 1 21 381 401 381 404 0.95 7 15 5.1e-06 0.0007 20.6 0.9 1 23 454 477 454 477 0.96 8 15 3.2e-05 0.0044 18.1 4.3 1 23 483 506 483 506 0.98 9 15 0.0091 1.2 10.4 2.2 1 23 520 543 520 543 0.72 10 15 4.3e-06 0.00058 20.9 1.1 1 23 549 572 549 572 0.96 11 15 0.00018 0.024 15.8 4.4 2 23 578 600 578 600 0.95 12 15 2.9e-06 0.00039 21.4 1.9 1 23 605 627 605 627 0.97 13 15 0.0022 0.29 12.4 2.9 2 21 634 653 633 656 0.94 14 15 5.8e-06 0.00079 20.5 0.5 1 23 662 684 662 684 0.97 15 15 7.7e-07 0.00011 23.2 0.3 1 23 690 712 690 712 0.98
Sequence Information
- Coding Sequence
- ATGTTCCCAAATTACGTACTTATGAATCTTAGTGAATTCAAAGATCCTTCAAGAGTAGTAATAAGCCGTACAAGTGAATCTATTGCGGAATCGGATCCACTCTcactaaataatttagaacAACCTCTCGATAATAGAATGCGTATTGAAACAGAATCATTCTTTGTGAAAATTTCTCAATCTTGTACGGCTGGTGAAACTGATGGCATCACTCAAAAGAATCTATCTCTACAAAACAAAGTGCCAACAGAAATAACGATTAAAAAACCTGACTCTCTctctattgaaaatataggCGTAGTGACATCAGGTATGTTCAAGTGTAAAGTTTGcgataaattattcaaacgcAAGGAGACCTTGAAAGTCCATTACATTCGTTTACACTCAGAGATTTATCGTTATTCGTGTGAAGAATGTGGGGAAAGgtttaagttattttactATCTCAATCGTCACAAAAGGCAACAtcatcaaaaagaaaatttaacgGAAAGTCGACAATCttgtgaaaacatttttaatcaagatTCACAAccgaaaaagaaaacaagacTAAGATATAAAGACTTAGATCAGAGCGACCgaaattgcaatatttgtaataaaaagttCGCCAGACCGTATGATCTGAAGCTCCATAATATGCGTCTGCACACATGGGAATATAAATACGGCTGCGGAAAATGTTCGAAGCAGTTTAAGATTGCTAAAGACCTCGCCAGTCACATCAAGCGATTTCATCCAAGCTCAATGCCAATAGAAGCTAATTGCAATTCTAGAAAAAGGCAAAAAGAATCTGACAAAGTTCAACAAGAGCCAACAGAAGCTCAGCAAGAACCTACAAAAATTTACCAAGAAGACAAGCACGAGATTCAAAAACACTCCGTTGAAATTCAACAGGAATCTGCAAATGTTCAACAAGAGCCTACAGAAAGTAAAcaagaaactaaaaaagttgaaCAAGAAGAACATAATTCAGAAACTCTGCCATCTACTGTTATCGGAGATTCATctccaaagaaaaaaaagcaaatacATAAAAACTTAGAGCTGCCTTGTACCATCTGTAATAAGAAATTTGGCAGAGTTTATGGTCTGAAGGTTCATCATATTCGTATGCACACAacggaatttaaatttccctgTGACTACtgcagtaaaaaatttaagcttCTGAAAGATCTCCACAGACACCAAAGGTGCTTTCATTCGAAAGACATTCCAACAAGAACCCAACGTAATTCGGGAAAAGGGCAACAAAAAGATCGTGTTCAACAAATTGAAGAAATGGAACAGAATTCGACGGAGACTCCTTCGTCTactgaaatgaagaaaagtcCTGACAGAAAaggattatttatttgtgaaGTTTGTGGTAAGATCTGTACACGCAAGGAATCTTTACAAGCGCATATAACTAGCAGACACAGTGGAGAATTTAACTATAGATGTGCACACTgtggaaaagaatttaagaccCGGAAAGTTTTATGTGCACACTTAAAACGTGGTCATCAAACACAAAAAGTTTCAGTTGGGAAAGATGCTggtgaattttattgtaacaTTTGTGGCATCAAAGTCTTGCGCAGAAGCACTCTCAAAATCCATCATCTTCGTAAACATACGcatcagtttaaattttcttgtaaatgGTGTGGCAAAAACTTCAAAGTCCAAGGAGATCTTACCACTCATACTAGGCTTCGTCATCTAGAACCACCTGCGGTATGCGAGGTTTGCGGCAAGACATGCAAAAATAAACATAGTCTTTATGTGCACCAAAAATACAATCATTTCCAAACCAGATTCGTATGTCCCgtttgcaaaaaatgttttgtttctCAAGAAAATCTCGATCAACACATGTTCAACCATGAAAAGAAGGATAGATTAACTTGCGCAGAATGCGGAAATACATTTGCGACTAAATGTACACTTCAGAGTCACATACGTTGTGTGCATCATGAAGAAAAGACGTTTGCTTGTCAGGTTTGTGGAAAATTGTTCCCTTCACAGTCTAGACTGAGAAAGCATCTACTAACTCATACAGGAAAACGACTTTTTGTGTGTGATATTTGTGGGAAACCATTTAAGCAGAAACCTAGCTTAATTAGCCACCGAAAACTGCATCCCGGTGAGCACCCTCCACTCCCTATTATACGACTGGATGATGTCCTTAGTGAGTTCATCcagaaatag
- Protein Sequence
- MFPNYVLMNLSEFKDPSRVVISRTSESIAESDPLSLNNLEQPLDNRMRIETESFFVKISQSCTAGETDGITQKNLSLQNKVPTEITIKKPDSLSIENIGVVTSGMFKCKVCDKLFKRKETLKVHYIRLHSEIYRYSCEECGERFKLFYYLNRHKRQHHQKENLTESRQSCENIFNQDSQPKKKTRLRYKDLDQSDRNCNICNKKFARPYDLKLHNMRLHTWEYKYGCGKCSKQFKIAKDLASHIKRFHPSSMPIEANCNSRKRQKESDKVQQEPTEAQQEPTKIYQEDKHEIQKHSVEIQQESANVQQEPTESKQETKKVEQEEHNSETLPSTVIGDSSPKKKKQIHKNLELPCTICNKKFGRVYGLKVHHIRMHTTEFKFPCDYCSKKFKLLKDLHRHQRCFHSKDIPTRTQRNSGKGQQKDRVQQIEEMEQNSTETPSSTEMKKSPDRKGLFICEVCGKICTRKESLQAHITSRHSGEFNYRCAHCGKEFKTRKVLCAHLKRGHQTQKVSVGKDAGEFYCNICGIKVLRRSTLKIHHLRKHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPAVCEVCGKTCKNKHSLYVHQKYNHFQTRFVCPVCKKCFVSQENLDQHMFNHEKKDRLTCAECGNTFATKCTLQSHIRCVHHEEKTFACQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKPFKQKPSLISHRKLHPGEHPPLPIIRLDDVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -