Slae002605.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000003.1:11540221-11543069[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 1.5e+02 3.8 2.3 1 21 43 63 43 64 0.94 2 20 0.00027 0.037 15.2 0.3 1 23 72 94 72 94 0.97 3 20 7.3e-05 0.01 17.0 1.2 1 23 109 131 109 131 0.97 4 20 0.00073 0.099 13.9 0.7 2 21 146 165 145 166 0.94 5 20 5.8e-06 0.00078 20.5 1.5 2 23 175 196 174 196 0.97 6 20 0.37 50 5.4 0.9 2 23 201 222 200 222 0.84 7 20 2.9e-06 0.00039 21.4 0.9 2 23 229 250 228 250 0.96 8 20 8.4e-05 0.011 16.8 0.1 1 23 259 282 259 282 0.97 9 20 0.55 74 4.8 4.8 1 23 293 315 293 315 0.98 10 20 4.9 6.6e+02 1.8 0.1 2 14 322 334 321 334 0.84 11 20 0.0094 1.3 10.4 2.4 1 23 412 434 412 434 0.98 12 20 0.00075 0.1 13.8 2.3 3 23 445 466 443 466 0.94 13 20 7.3e-06 0.00099 20.2 4.5 1 23 472 494 472 494 0.98 14 20 0.072 9.8 7.6 0.2 1 23 498 520 498 520 0.97 15 20 1.7e-05 0.0024 19.0 2.6 2 23 527 548 526 548 0.97 16 20 4.5e-05 0.0061 17.7 0.1 1 23 554 576 554 576 0.98 17 20 0.06 8.1 7.8 0.8 1 23 582 604 582 604 0.97 18 20 0.00038 0.052 14.7 0.2 2 23 611 632 610 632 0.96 19 20 6.3e-07 8.5e-05 23.5 0.6 1 23 638 660 638 660 0.98 20 20 1.1e-07 1.5e-05 25.9 1.9 1 23 666 688 666 688 0.99
Sequence Information
- Coding Sequence
- ATGTCAATGAATGTGAAATCTGTGAAAACATTTGAGGAATATGATTCGACTTCAGAGGTTCCATCCGATGACACTGATTTCTTACCTCCACGTCCTACTCAGAAATCTGATAAACAAAGGAAACAATATCGCTGTCGGTTTTGTAATTTCAGaactatatataaaaactCTTACCTATATCATATGGAACGATATAATGAAGCTCCTGGCAGGTTTGAATGTAGATTGTGCGACGAGAGTTTCcctttgaaaaaagaattaatcaCTCATTGGAAAAATCACAAACCAAACTATTTCCCTGATGGCCCAGATAAGCCAGGATTCTATCAATGTGATAAGTGTGATGAAAGATTTGCAAAAAGATTTCAGCTTGGCAGACACAGGCAAGCACATCGACTGAACTTTGTTCCAGAACGGGAACAGAGGAAAATAAAACGTTGTAAACTCTGcagtaaaagattttattcagAAGCTACTTTGCTCAAGCACATGGAACAAGCCACTGATGAGCATAAACCTGTGGAATGTGAtctttgcaaaaaaatgttcagatcAAAGCGATACCTCAAAATGCATCTCAGAATTCACATCGGCCCACTTATTTGCCACATTTGCGGATCGAGGAAGTACTCGGATGCTTCTATGAAAGTTCATATTCGGCGACATAATAAGGATTACTATATTCATTGTGACGTGTGCGACAAAGGGTTTTACAACAAAAGCGAGCTGAGACTTCATATGATCAGTCATACCAATCGGGAAACCAATCGTCCATTTGTGTGCCAAATTTGTGGACGTTCTTATCGCTCTGGTTGGTATCTCAAGTTGCACGTGAAAATTGCACATGTTGACGCTGAGGAATATAAACGCAAGCGGTACAAATGCGACATTTGCGATTTCGAAACTCATCTGCTAAAATGCTTAACAATACATAAACAAACGCACACTGGAGAGAATTTGATATCTTGTGAATTGTGTAACAAGGTGATCAATAGGAGGTCTGTCGAGGTGGCATTGGATCCATCAGGAAACAGCCTCAAATTGGAGACATATGAAATAGAGGAGGAAACAATTGAGGTGCCCCACGAGCAGATTATAGAATATTCACTCGCAGAAACTGGAGAGATCcatacagaaataaaaatgaacacGTCTTTAAATCATAATAACATTGAGGAACTGTTGCAATTAAGTACAACTGATGCAGATGATCAGACGAAGATTAGTAAAACATATGAATGTGATTTCTGTGGAAGAAGAATGAAGAAGAAGGCATTGTTCATGAAACACAAGCTTCGCCATGAGAGGAAACTTTCCGGAGAAAGTACACATTGTGAAAAATGCGAAAAAGATTTCAGTGACGAGGAGAAATTACGGAAACATAAGATCAAAGCTCATCAGGATGAAAAACCTTATCAGTGTAGCCTTTGTGGAAAGTGTTTCAAAACCGAAGAGTTTTTAAGAACACACCTGAAACAACATAACAAGCGATTCGTATGTGATGTTTGCGGAATCTCGAAAGTTTCAGGATACGATCTTAGGCTTCATAAAAAGAAACACAATCAGGAATTCGTTACACACTGTAATATCTGTAACAAAGGCTTTTATACTAATCAAACCTTAGAACGCCATTTATTAACGCACACGGGTGAAAAACCCTTTCCATGTAGGATTTGCAATACTGCTTATGCCAGTGCAGCATATTTAAACATGCATATGAAATCTCATGGAGAGCGGCAAAAACACAAGTGCAATCTTTGCGACTTTGAAAGCTACTGGAAAGCAGCATTGAAGGTCCACCTTAGAATTCACACTGGCGAAAATCAAATCTCATGTGATATTTGTGGGAAATTGGTTTCTAGTAAGACTTATCTTCAGATTCATAATCGAATACATTCGGGAGAAAAACCACATGTCTGCGAAGTTTGCGGCAAGGCTTTTAGCGTTCGAAAATATCTAATTGTTCACCTCAGGACACACACTGGTGAACGTCCCTATGAATGTAAAGTTTGTCAAAAGAGGTTCACACAACAAGGTTCTCTTAATTCGCATATGAAGTCCCACAGCGAGACTCGAtga
- Protein Sequence
- MSMNVKSVKTFEEYDSTSEVPSDDTDFLPPRPTQKSDKQRKQYRCRFCNFRTIYKNSYLYHMERYNEAPGRFECRLCDESFPLKKELITHWKNHKPNYFPDGPDKPGFYQCDKCDERFAKRFQLGRHRQAHRLNFVPEREQRKIKRCKLCSKRFYSEATLLKHMEQATDEHKPVECDLCKKMFRSKRYLKMHLRIHIGPLICHICGSRKYSDASMKVHIRRHNKDYYIHCDVCDKGFYNKSELRLHMISHTNRETNRPFVCQICGRSYRSGWYLKLHVKIAHVDAEEYKRKRYKCDICDFETHLLKCLTIHKQTHTGENLISCELCNKVINRRSVEVALDPSGNSLKLETYEIEEETIEVPHEQIIEYSLAETGEIHTEIKMNTSLNHNNIEELLQLSTTDADDQTKISKTYECDFCGRRMKKKALFMKHKLRHERKLSGESTHCEKCEKDFSDEEKLRKHKIKAHQDEKPYQCSLCGKCFKTEEFLRTHLKQHNKRFVCDVCGISKVSGYDLRLHKKKHNQEFVTHCNICNKGFYTNQTLERHLLTHTGEKPFPCRICNTAYASAAYLNMHMKSHGERQKHKCNLCDFESYWKAALKVHLRIHTGENQISCDICGKLVSSKTYLQIHNRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHSETR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394556;
- 90% Identity
- -
- 80% Identity
- -