Slae003879.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000007.1:7960591-7962497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.2 28 6.2 0.5 2 23 125 146 124 146 0.96 2 15 0.023 3.2 9.1 0.5 2 23 151 172 150 172 0.97 3 15 1.2e-06 0.00016 22.6 1.8 1 23 178 200 178 200 0.98 4 15 3.5e-07 4.7e-05 24.3 0.4 1 23 241 263 241 263 0.98 5 15 0.0019 0.26 12.5 0.1 5 23 273 291 272 291 0.94 6 15 2.7e-06 0.00036 21.5 2.4 1 23 297 319 297 319 0.97 7 15 8.7e-07 0.00012 23.1 1.3 1 23 325 347 325 347 0.95 8 15 3e-05 0.0041 18.2 0.6 1 23 353 375 353 375 0.98 9 15 1.9e-05 0.0025 18.9 7.2 1 23 381 403 381 403 0.97 10 15 3.2e-07 4.4e-05 24.4 0.8 1 23 408 430 408 430 0.97 11 15 5.4e-05 0.0074 17.4 1.1 1 23 436 458 436 458 0.97 12 15 2.3e-06 0.00032 21.7 3.6 1 23 464 486 464 486 0.96 13 15 1.2e-06 0.00016 22.6 1.3 1 23 492 514 492 514 0.98 14 15 1.5e-06 0.0002 22.3 1.2 1 23 520 542 520 542 0.99 15 15 3.3e-05 0.0045 18.1 1.6 3 23 550 571 549 571 0.94
Sequence Information
- Coding Sequence
- atgaAAGACAAATTCGtggataaaatgGCTAACAGTATTGTGAGTATTTTGTTCAAGGAGGGAACTGGAAAATCTGATTCTGACTTCATGGAGGATATTTGTTCTGCCATTTTTGAAAAGACTTTATTATCTATGGAGAATCATGAAATGGACTTCTCTGATGAAATGgTCAAACTGGACCTGGAAGGAGAGACGAGTACTCATCAAAACTGGGTAACTCAAATCGCAAACACAAACCTCTGCGACAAGGAAGACGGATCCCTCCAGCGATGTCTAATAAACGTTGGTTTCGGCTCCATTATCCAAGaagaaatccttgaaaagCTGCAATTCCTGCCAACAAGTCCACAACAgcaaaaattttgcaaagtgCAATGCTCTATTTGCAAAAAATGGTTCCTGAACAACGACTCTATGGTAACTCACCTAAAACTCCACTGCAGTGGAAATCGCTGCGAAGTCTgcgaagaaaattttcttgacaCTACGACTCTCTACACTCACATGTTAACCCACATTGGGATGAATCTGTTCGAGTGCAACATTTGCCAAAAAAAATTCCCCTATAAATTGAGTCTCCGGAACCATATGCAGACTCACTCCCTcgaaaaagaattcgaaaacGAGCTTGCAAAAAAATTCGGCTCAGAAATTCAAGGGGAAATCTACCACGAGGAATTAAATTCTACCCCAAGTCAAAATTCCATTGAAGAAAGGCCTTTCTCCTGCGATATTTGCGAGGTTTCCTTCAGAGAAAAGGGAAATTTAAATCGCCATATGCTGACCCACTCCGAAGAAAAGACCTATAAATACGACCTTTGTTTTGcttcttttaaacaaaaaggCCAGTTAAATATTCACATGATTTCTCACGCTGGGAACAAACAATTCAAATGCTCGACGTGCCACAGATCTTTCGCCCAGAAGAATGCTTTGAATAATCACATGTTAGCACACAGTGAAGAAAAACCTCATGCTTGTGATATTTGTGACAAGacttataaaagaaaatccgAATTGATAAGACACTCAATGGTTCATACTGGGGAGAGACCTTACGAATGTAAAGAATGTCTGATGACCTTTAGAGAAAAGGCAAAACTGAATTCTCACATGTTGGTTCACACTGGTGAAAAACCTCACGAGTGTCATATTTGTCACAAGGCTTGTGCAAGAAAATCTGATTTAAACAGTCATATGCTTTCTCACACTGGGGGACAGTATGACTGTACAGTTTGCGAAAAGATTTTTACTAGGAAGTCGGATTTAAACAGACATACTCTGATTCACACGGGGGAGAAACCTTTCGCTTGTGAACATTGCGATATGGCTTTTAGAGAAAAGACAAGACTGAATTCCCATATGCTTGTTCACACTGGTGACAAGAGACACGCTTGCCATATTTGCCAAAAGTCGTTCAAGGAGAAGGCATTGCTGAAAAAGCATATGCTAATTCACATGGGCGATCGACCTTACGAATGCTACGTTTGCCAAAAAACTTTCACTCAGAAGACGACTTTGAATAGTCATATTTTAATACACGAGGGCGAGTCTTCCTATGAATGTAGCACTTGTAATAAGTCATATAGAGATAGAATTGCGTTAAAAAAGCATTTACTGACACATGCTGGggataaatttaatgattgtccgatttgtttaaagaaattcacgCACAGATCGACTTTGAATAATCATATTGCAAATTCGCATAGTTCCTGA
- Protein Sequence
- MKDKFVDKMANSIVSILFKEGTGKSDSDFMEDICSAIFEKTLLSMENHEMDFSDEMVKLDLEGETSTHQNWVTQIANTNLCDKEDGSLQRCLINVGFGSIIQEEILEKLQFLPTSPQQQKFCKVQCSICKKWFLNNDSMVTHLKLHCSGNRCEVCEENFLDTTTLYTHMLTHIGMNLFECNICQKKFPYKLSLRNHMQTHSLEKEFENELAKKFGSEIQGEIYHEELNSTPSQNSIEERPFSCDICEVSFREKGNLNRHMLTHSEEKTYKYDLCFASFKQKGQLNIHMISHAGNKQFKCSTCHRSFAQKNALNNHMLAHSEEKPHACDICDKTYKRKSELIRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCTVCEKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFREKTRLNSHMLVHTGDKRHACHICQKSFKEKALLKKHMLIHMGDRPYECYVCQKTFTQKTTLNSHILIHEGESSYECSTCNKSYRDRIALKKHLLTHAGDKFNDCPICLKKFTHRSTLNNHIANSHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389646;
- 90% Identity
- iTF_01389646;
- 80% Identity
- -