Basic Information

Insect: Synergus japonicus
Gene Symbol: ush
Assembly: GCA_900474275.1
Location: UCOH01012339.1:77834-81889[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0096 0.98 10.4 0.3 3 21 250 268 248 273 0.88

2 8 4e-05 0.0041 17.9 1.3 1 23 300 322 300 322 0.98

3 8 0.091 9.4 7.3 1.6 3 20 361 378 360 380 0.93

4 8 0.014 1.4 9.9 4.4 2 21 587 606 586 607 0.94

5 8 0.052 5.4 8.1 0.0 3 20 634 651 632 653 0.91

6 8 0.099 10 7.2 0.0 2 23 692 713 691 713 0.94

7 8 0.0084 0.86 10.6 1.4 1 23 719 741 719 741 0.99

8 8 0.041 4.2 8.4 0.5 3 21 839 857 838 858 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0096	0.98	10.4	0.3	3	21	250	268	248	273	0.88
2	8	4e-05	0.0041	17.9	1.3	1	23	300	322	300	322	0.98
3	8	0.091	9.4	7.3	1.6	3	20	361	378	360	380	0.93
4	8	0.014	1.4	9.9	4.4	2	21	587	606	586	607	0.94
5	8	0.052	5.4	8.1	0.0	3	20	634	651	632	653	0.91
6	8	0.099	10	7.2	0.0	2	23	692	713	691	713	0.94
7	8	0.0084	0.86	10.6	1.4	1	23	719	741	719	741	0.99
8	8	0.041	4.2	8.4	0.5	3	21	839	857	838	858	0.92

Sequence Information

Coding Sequence: ATGATGGTCGTCTCCAgGGAGGATGAGGAGTGGAGTGACTCGGAAAAGACACCGTCCGTGAACAGTGGAGCGGAGGGTTGTGGATCCGCGGTTTCAAGTCCTTCAGCATCAGCCGTTGAAGAGGAGTCAAGTTTACCACCCCCACCAAGACTCAACTCGATATCTGTGATATCCCCGAATTCCGTTGCTGAGGATATCCGGTTACGATTGAGCGTACTTTCCGAAGATGCGAGAAAACGACTCTCTAGCTTTACCGAGGATATCGAGgCTTCGAGAGGATCGAGAGAAAGGCATTCTTCGACAAGAACAACATCGACTCAAGAGTCGAGTCCGAAGGCATCACGAATCGACGTCGACGAGGATTCGAATATGGTTATTAAAGACTCGGAGGATTGTGGTGGTAGACCCTCGTCTTCGTCATCCTCAACGCGGCGAAGAGATACTAGAAGAGATTCCGAAGACTCTCGACGATCAGATGACGCATCCTACGATACAAAAAAGGCGAGGCTAGATGATGATGCCACGCCGAGATTGAGACTGAATGCTAGTCTGGCAACGGATCCTGCTCTCCGGCCAGCTACCGTTGCCGCCCTCACTATCAAACCCGAAAATGTCTCTCCACCAAATCAAACACCACCTCTTCCTGCTGGCCTCCAAAACGcgATAGCCTCTGGCAGACTTTTCGTGCTGCCAACCGACGGAAAGGAGACGATAACAGTAGAGGCGTCGCGACCAGCTCCACTAATTTGTCGTCCCTGTGGGATTAGGTTTAGTTCAGCAAGTACTTTGGAGGCTCACCAGACCGTTTACTGCGCCCACAGGCCACGACTCGAGGAAGATGGGGCGAACAATGACGACGATGACGAAAAGAATGGCAAATTCGACGTTCGCAAGGCCTATGCTTGCCCTCACTGTTCATACAGTGCTGATAAAAAGGTTTCACTCAATCGACATATGCGGATGCATGCTGCCTCACCTGTGCCACCTTCGGTACCACCAGCTCCAACAACCGCAGTAGGAAATTCTGGAAGCGTCACTCCTACGGTGAATGGATCACTGAATGAAGAGGCTGAAAGATACTGTCGGAATTGTGACATCAGGTTTAGTTCCTTGAAGACCTACCGAGCACACAAGACTCATTATTGTAGTACTAGACACGTAGTGAAAGACGTTCAACCAGCTCCCGCATTCGTGAAAGCCTCGCCGCCAACAAGTTCGAGTCCTGGTGATTCGCCACCACCTCAACCGTGCTTAGCCCTGCCAACGAATCCCATTCTCATCGTTCCTTATTCTCTCTTCCGGGGCGCCAGTGTGCTGGCAGCACCAACTCTTCCCGCTCCAGACACCGCGTGCTTCCTTTTGCCAAATGGTTCCCTGCAGCCGATGACGAGGGGCATTTCCACTACACAGAACACTATCACTGAGGCTCCCTCAGTTCTCAGGGCTGCCAACAAACCTTCAACGCCATCCTCCGGTAGTAATACCTCCACTTCACCTTCCGCTCCAGCCTCGGCACCACTCGATCTCAGCATCAGGCGTTCGCCTGTTCACCAGGATGAAAAGGAGAATAGGGTCTCCCCAGCTCCGTCGTCCTTACCGCCTCCTCCAGGAAGTCCCAGATCCAGAGGCAGCAGTAGTCCCAGAGCGAGGTCTCAAACTGGAACTACTGCTCCTACGGCACCTACGGAACTAGCACTCAGATTGGCTGAACTGCCTCCACCTCCAGTTCCTGGAGTTCTTGTTAAGCAAGGCGTCTCTAGGTGTAAAGAGTGCAACATCGTTTTCTGTCGACATGAAAATTTCGTGGCTCATAAGAAACACTATTGTCAAGCACGAGAAAGTACAATAAGCAGTCCACCGCCACCTGGTACACCTTCACCTCCTCTCGTTCAACTGATATGCGCCGCTTGTGGCATTAAATTCGCTTCCATGGATAATCTCGCAGCTCATCAAGCCTTTTACTGTCCTAAGAGACCCGAACCTCAAGAACATCATACTCGATGTCACAAATGCAAGGCGATAATCGAAGCCGGAAGTACACACACTTGTACAAGTAGTTCGACAGGTGGATGGCGGTGTCCAGTTTGCGGTGCAGTGAGTCCAACAGCTTTAGCGGCTCAGCGTCACATGGATGCTCATCAAGGTGTTAAAGCTTTTAGGTGTACGATTTGTCGTTACAAAGGAAACACCCTTCGCGGAATGAGGACACATATCAGAATGCATTTTGAAAAGCGCGGCACAGATCTACAGgaggaaaattatataacatGTGTGCTCGATGATGAAACAACGACACCAACGCCTGAACCGACTCCGGCTGTGACACCTGAAGAGGTTCCAGTCGAGACTCATGTCAATGGGAAATCAGAAAGGAAAAGTAGTCCTCAACCACAGATTCCACCTCAACCTCCTGCCTCTCAAACTCCGACTGGCACCGGGAAAGTCAAGCAAGAACGGGAGGACACACCACCACCCGAAGAGAGTCTCGATCCTAGCAAAACTGGCCCTAGATACTGTCGATCTTGCGATATTAGCTTTACCTACCTAAGCACGTTCATCGCgcataaaaaattctactgtTCTAGCCACGCCGGTGAAGCTAGTaacaacaacaataataacaataataactCCAGCAGCCATACCACTACGCCGCCAAGCGGTAGGACGGAGGCTCCTGTACTATAG
Protein Sequence: MMVVSREDEEWSDSEKTPSVNSGAEGCGSAVSSPSASAVEEESSLPPPPRLNSISVISPNSVAEDIRLRLSVLSEDARKRLSSFTEDIEASRGSRERHSSTRTTSTQESSPKASRIDVDEDSNMVIKDSEDCGGRPSSSSSSTRRRDTRRDSEDSRRSDDASYDTKKARLDDDATPRLRLNASLATDPALRPATVAALTIKPENVSPPNQTPPLPAGLQNAIASGRLFVLPTDGKETITVEASRPAPLICRPCGIRFSSASTLEAHQTVYCAHRPRLEEDGANNDDDDEKNGKFDVRKAYACPHCSYSADKKVSLNRHMRMHAASPVPPSVPPAPTTAVGNSGSVTPTVNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDVQPAPAFVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGSLQPMTRGISTTQNTITEAPSVLRAANKPSTPSSGSNTSTSPSAPASAPLDLSIRRSPVHQDEKENRVSPAPSSLPPPPGSPRSRGSSSPRARSQTGTTAPTAPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESTISSPPPPGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCPKRPEPQEHHTRCHKCKAIIEAGSTHTCTSSSTGGWRCPVCGAVSPTALAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDETTTPTPEPTPAVTPEEVPVETHVNGKSERKSSPQPQIPPQPPASQTPTGTGKVKQEREDTPPPEESLDPSKTGPRYCRSCDISFTYLSTFIAHKKFYCSSHAGEASNNNNNNNNNSSSHTTTPPSGRTEAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01391534;
90% Identity: iTF_00461133;
80% Identity: -