Basic Information

Insect: Synergus japonicus
Gene Symbol: -
Assembly: GCA_900474275.1
Location: UCOH01000024.1:53300-54316[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.8e-05 0.006 17.4 0.5 1 23 65 88 65 88 0.94

2 9 6.1e-05 0.0063 17.3 5.3 1 23 94 116 94 116 0.98

3 9 0.0047 0.48 11.4 6.5 1 23 125 148 125 148 0.95

4 9 0.00034 0.035 15.0 1.2 1 23 154 176 154 176 0.95

5 9 1.1e-05 0.0012 19.6 2.1 1 23 181 204 181 204 0.96

6 9 0.0006 0.062 14.2 0.7 1 23 210 232 210 232 0.98

7 9 2.1e-06 0.00022 21.9 0.5 1 23 236 258 236 258 0.98

8 9 0.0011 0.11 13.4 7.7 1 23 264 286 264 286 0.98

9 9 6.2e-05 0.0064 17.3 2.4 1 23 292 314 292 314 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.8e-05	0.006	17.4	0.5	1	23	65	88	65	88	0.94
2	9	6.1e-05	0.0063	17.3	5.3	1	23	94	116	94	116	0.98
3	9	0.0047	0.48	11.4	6.5	1	23	125	148	125	148	0.95
4	9	0.00034	0.035	15.0	1.2	1	23	154	176	154	176	0.95
5	9	1.1e-05	0.0012	19.6	2.1	1	23	181	204	181	204	0.96
6	9	0.0006	0.062	14.2	0.7	1	23	210	232	210	232	0.98
7	9	2.1e-06	0.00022	21.9	0.5	1	23	236	258	236	258	0.98
8	9	0.0011	0.11	13.4	7.7	1	23	264	286	264	286	0.98
9	9	6.2e-05	0.0064	17.3	2.4	1	23	292	314	292	314	0.97

Sequence Information

Coding Sequence: ATGAGAAGACAAAGAAACAAAACTGCCAAAGGAACTTTAccaaaacaaataaatattgtaattaaaaaagataaaaccCTCACTTTaccagaaaaagaaattaagaatCTTGATCTGAATGAtgatgataaaaattcaagtgaagAAGAAATTAAGCAAGATGTTCTGTACAAAAGATTAAACGACGGTAATTACACTTGTGATATTTGTCAGATGACTTTTGAACAGAAAAGTAAGATTTTGCGTCATATCATTGGCAAGCACAGTTTTCACCGGCCTTTTAAATGTTCCTCTtgtacgaaatcttttaaatacaaGTGTGACCTCAAAGCTCATCGCTTAGTACACCAAGAAATTGATTCAAGTTTGCTTCATTATTGTGACAAATGCGAATATAGAACAAAGACAAAAAACAATCTTAAGACTCATTACACTCGCAAGCACACAGACGATTATAAATTCGCTTGTGAGCATTGTGGAAAACGATTCAAAATGGAATGGGACCTCAAATTTCATATTGGAACCCATGGAAGCTCCCAGCACATGTGTGACGTGTGCGGTAGATTTTATACTAGTAATTATTCCCTTTCTAAGCATCGCAAGGTGGCTCATCTAAACGAGTACAAGTTCCAGTGCTCAGTTTGCAATAAGAGACTGCTTACACAGGAAAATCTGGATAATCATATGCTGCAACATAACAGAACCTACGAGTGTATGGAATGTGGGAAGACTTTTGCTTCGAAGAGATATCTTGCTACCCATGCGACAACACACACGGGGATTAAACCTTACACCTGTCATTTGTGTGAGAAAACCTTTAGGACTTCTCATATGCGAAATACGCATCTCTTCACTCATTCGTCGGAACGACCTCATATTTGTGATTTGTGCGGACAAGCTTTCAAGAGACGATATTATATGATTGAACATAGGAAAAAACACCCGGATGCGCATCTCTCTTCGCCTCCTCTTCCTTTGGGTGGGCAAAAACACCACTCCGAATCAggaaagagataa
Protein Sequence: MRRQRNKTAKGTLPKQINIVIKKDKTLTLPEKEIKNLDLNDDDKNSSEEEIKQDVLYKRLNDGNYTCDICQMTFEQKSKILRHIIGKHSFHRPFKCSSCTKSFKYKCDLKAHRLVHQEIDSSLLHYCDKCEYRTKTKNNLKTHYTRKHTDDYKFACEHCGKRFKMEWDLKFHIGTHGSSQHMCDVCGRFYTSNYSLSKHRKVAHLNEYKFQCSVCNKRLLTQENLDNHMLQHNRTYECMECGKTFASKRYLATHATTHTGIKPYTCHLCEKTFRTSHMRNTHLFTHSSERPHICDLCGQAFKRRYYMIEHRKKHPDAHLSSPPLPLGGQKHHSESGKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01391445;
90% Identity: iTF_01393010; iTF_01391445; iTF_01393784; iTF_01394613;
80% Identity: -