Sjap003912.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01005801.1:919-4617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.066 14.1 1.0 1 23 265 287 265 287 0.97 2 12 0.00015 0.015 16.1 3.4 1 23 292 314 292 315 0.95 3 12 5.5e-05 0.0057 17.5 1.1 2 23 324 345 323 345 0.97 4 12 1.5e-05 0.0016 19.2 7.6 1 23 440 462 440 462 0.98 5 12 0.0016 0.16 12.9 1.1 1 22 467 488 467 491 0.90 6 12 1.2e-05 0.0012 19.6 0.5 1 23 529 552 529 552 0.94 7 12 7.4e-08 7.6e-06 26.5 0.9 1 23 584 606 584 606 0.99 8 12 0.00017 0.018 15.9 4.0 1 23 620 642 620 642 0.96 9 12 0.00059 0.061 14.2 6.7 1 23 648 670 648 670 0.98 10 12 0.00025 0.026 15.4 1.4 1 23 676 698 676 698 0.98 11 12 0.0001 0.01 16.6 6.6 1 23 704 726 704 726 0.97 12 12 0.00023 0.023 15.5 0.3 1 21 732 752 732 753 0.93
Sequence Information
- Coding Sequence
- ATGGAAATTGATAATGAATCTATGTACTTGTTGCAAAATGCAGATAAAATTTGTCGACTGTGCCTAGACTTGAATCAGAGTAACCAatgcatttttctttcaagcGACTCTGACCCCGAAAACACAAACGCCTTAGATTTggttaagaaattaattgtcCAAGGTGGTATCGAGatTGTAGAAGATGATGGTCTTCCATCTAGCATCTGCCTAACATGCCTTTCAAAAGTTAATGCAGCTCATGAATTTAGAGAGCAGTGCCAAATAGCAGATAGGACCTTGAGAAGAGCCTATGGAAAGcctcagaaaaattttaatttagattcaTCATTATCACAAAAACATCAGTCATCACAAACGGaaggtaaaattttattattcgttAAGGATGAAGAAGAGGAAGTCGAAAAGTCTAATTCTGCAGAAGATGATCAGTCCAACATTAATTCAAACACAAATGATGAAATTGtcgtaaaatacaattatccttttaataatgaattaaatattaatgaggCATCTGTTACTAACGAGTCATCGAGCAAAGATGACACTTCTCAgctggaaaaagaaaatgccCCATTCAAGAGAGAAGGTTGTAAAACTAGAAAAATGTCTATGTTCAAGAGAGTGACTTCTATGGAAaacttaaagaatttcaaagaaagacAGAGGAAgtacattaagaaaaatacaaattcgAAGTCTGAAGCAAGTGAAATGGACTTGCCTATAGGAACAAGGATGCGAAGTGCTAGTCAAAGATTAAACAACGAAGAATCGGAATCACGTTTTGAGTGCACCACGTGTAAGAGCACTTTTTCCACTAAGCGAGCTTTGGACAAACATGCATTGATTCATGACGACAAAAAGTTTAAGtgtgaaaaatgtaataagGAATTCTTCAGGCCTGACCAACTGTCTGAACATTCCAAGTTGCATCATCCGAAAGAAAAACCTAAACCCgTACGCTGTAAAATTTGTGAGAAGAGTTTCAAAAAAACAGATACGATGGTGAGACACTTAAACGTTCACAAGAGAGCGAATCCTAAAGAAGTTTTTTCCATCCTTAAGGAAATCagggataaaagaaaaatggagaattctgttgaagttgaagaaaatgatcagtttataaataatggaTTAATTGCTGAGGAAATGGAAACATCATCAAAACAAGCGGACAATATTTGCACTAAGGAACTCAGAAAACGTGTGACAGATTTTCAATCCAAGCAAGATAACCAATCCGATATTTTCAATTCGGATTCTGATAGTGAAAATGAATCCGATTCCGTAAATGATATGTCGTTATTTCGTTGTAAACATTGCACAAAGTGTTACACGACCGAAAAATCTTTGCAAAGGCACATGCTGATACATGATGAAAAGAAATTCGTTTGCAATGTCTGCAATATGAAGTTCTTCAGACCTGACAGACTGAAAAGTCATAGAGACAGGTATGGACACAACGAGGACAAAGTTTCTGAACCCGAGAAGCCTCCAGATGACAAGTCTGCcataaaactaattaatagtTGGATAAGAGAAGAGTTAGACTCTGATAATGAGGGCAAGGGTTTCCCGTGTGATCTTTGCGGAAAATCCTACGTCACGAAGAAGTCCTTAGCTAAACATCGAACAAACGCACACGAGTCTCAGGAAGAATTTTGCAAAAGCTGTGGGACTGAATGCGTCTGCAACGATAAGCCCAAAGTTCAAGTAAAAACAGAGAAAGGTAAAATCTACACATGCGATGAGTGTGgtaaatcatttgaaaaggAGAGCAAACTGCAAAAGCACTTAAGAATCCACGAACGCGCTAAAGAACAGCAGGATGCAAACTTCAAGAGATTCCTTTGCCACATCTGTAGCAAAACTTTCAGGCAAAATACAGGACTGATGTTCCATATGAGAACGCACACAGGTTACAAACCGCATGTTTGTAAACATTGTGGTCGTGGATTCACTTCTAATTCTAATTGTATTAACCACGAAAGAACGCACACTGGAGATAGACCCTTCGTTTGTCAATATTGTAGCGCCGCTTTCGCCAAGTCTTGCACTTTAAAAGCACACATCACAACGCATACCGGAGAGGCGAATTACCATTGCAAAACGTGTGGCAAATCTTTTAGAAGATTAAAGTACTTGAAGGAACATAAGTTCACGCACACCGGCGAAAAACCTTACGCTTGTAAGATCTGTGGTACTGCCTATAGCCACTCAGGTAGTTTATTCGTACATGAGAAAAAATGTAAGGCCCAGTATAACAATTTCCAGTCCGCTTCCTCTCAAAACGCACAGAACTTTTGCCAATCACAGACCAATGTTGTGACAACATCTCCTATCGTCACGCCTTTAATGACGACATTACCTCCGACTCATCATATTGGAAATATGAACAATTCCTTAGATGTacaatctaataaaaattatatggaGAATGTTCAGAGAATGAATTCTCATGCTGCTGCGGTAGCTGCAGTTGGAAATGCAGGATTACATGTTCATGCAAATACAGATGTATCTGATATGGCATCTACGGTGAGAAATTTCGCTATAATTGGACAAATGTTCCATTAG
- Protein Sequence
- MEIDNESMYLLQNADKICRLCLDLNQSNQCIFLSSDSDPENTNALDLVKKLIVQGGIEIVEDDGLPSSICLTCLSKVNAAHEFREQCQIADRTLRRAYGKPQKNFNLDSSLSQKHQSSQTEGKILLFVKDEEEEVEKSNSAEDDQSNINSNTNDEIVVKYNYPFNNELNINEASVTNESSSKDDTSQLEKENAPFKREGCKTRKMSMFKRVTSMENLKNFKERQRKYIKKNTNSKSEASEMDLPIGTRMRSASQRLNNEESESRFECTTCKSTFSTKRALDKHALIHDDKKFKCEKCNKEFFRPDQLSEHSKLHHPKEKPKPVRCKICEKSFKKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKMENSVEVEENDQFINNGLIAEEMETSSKQADNICTKELRKRVTDFQSKQDNQSDIFNSDSDSENESDSVNDMSLFRCKHCTKCYTTEKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHNEDKVSEPEKPPDDKSAIKLINSWIREELDSDNEGKGFPCDLCGKSYVTKKSLAKHRTNAHESQEEFCKSCGTECVCNDKPKVQVKTEKGKIYTCDECGKSFEKESKLQKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKHCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNFQSASSQNAQNFCQSQTNVVTTSPIVTPLMTTLPPTHHIGNMNNSLDVQSNKNYMENVQRMNSHAAAVAAVGNAGLHVHANTDVSDMASTVRNFAIIGQMFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01390545;
- 90% Identity
- iTF_01394579;
- 80% Identity
- -