Sjap006971.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01010199.1:1408-3255[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2e-05 0.0033 18.2 4.8 1 23 22 45 22 45 0.94 2 15 0.0058 0.6 11.1 3.1 1 23 52 75 52 75 0.95 3 15 6.4e-05 0.0066 17.3 1.8 2 23 82 103 81 103 0.97 4 15 5.9e-05 0.0061 17.4 2.1 1 20 110 129 110 132 0.94 5 15 0.00018 0.018 15.9 2.8 1 23 138 160 138 160 0.98 6 15 1.2e-06 0.00012 22.7 0.2 1 23 167 189 167 189 0.98 7 15 4.2e-06 0.00043 21.0 4.1 1 23 195 217 195 217 0.98 8 15 0.00039 0.04 14.8 0.7 1 23 223 245 223 245 0.98 9 15 1.4e-06 0.00014 22.5 2.8 1 23 254 276 254 276 0.98 10 15 1.7e-06 0.00018 22.2 6.1 1 23 282 304 282 304 0.98 11 15 1.3e-05 0.0013 19.4 4.3 1 23 324 346 324 346 0.98 12 15 7.9e-05 0.0082 17.0 3.8 1 23 352 374 352 374 0.95 13 15 0.0036 0.37 11.7 1.3 1 23 380 402 380 402 0.98 14 15 2.5e-05 0.0025 18.6 0.9 1 23 412 434 412 434 0.98 15 15 0.0099 1 10.4 2.4 3 23 494 514 492 514 0.92
Sequence Information
- Coding Sequence
- atgttcGCAAGTCAAAATCGCCTAGACGAGCACCAACGGGTTGTTCACTTAGAAAAAAAGCTTTATAAGTGTAAAcagtgcaaaaaaaaatttagtgatAAAGATAAACTTAAAGATCATTATACAAACACTCACTATGGAAAAGGTGCAGCCTATGAATGTACAATTTGCGGCGATAGATTTAGAAGTAAACAACGTCTTAGTAATCATCACAAGTTTGTTCACAAAGTTAGATGTACTCTTAAATGCGACATTTGTAAGGAAAAATTCAGAGCACGCTATGACTTGAAATTGCATAGAAAGACTCATATGGAAGATAAAAAACCTTTCAAGTGTTCAAAATGTCCAAAAGCTTATTCTAAAGCCCACTATTTGAAACGACATCTTCCTATCCACAAAAACAAGAAACGTTTCGTATGTAACGTTTGCTCGAAAGGTTTTATTTCGTTATGTTATCTGAATAATCACAAAAGGTCACActtggttaaaaaaaaaaaatacgagtGCCAAGTTTGTGGAAAAGGTCTCACATCATCATCTAATTTAAAAGTCCATGAGAATACTCATTTAGGAATTAAGCCGTTTGAATGTGATATTTGCAAGAAGTCTTTTACAGTCAAATGTAATCTTaaacaacatatttttaccCATCGAAAGACAAAAAGATACTCTTGTGACGTTTGCTCTAAACGTTTTGCGTTGCTGACTTATCtcaatattcataaaaagatACACACAGATAATATACAAGTGAAACCCCACGAGTGCAAAACCTGtggaaaaagatttataaagtCGCGGGACTTTAACGCTCACATGCGTGTCCACACGGGAGAAGCACCTTTTGAGTGTAAAAACTGTAAGAAGCAATTTAAACACGCAAGCACTCTTAGAAAGCACATGAAGTCTCATACTGAGGGTATAATTCAACCTTTCAAgcacaaaaagaaaataattaacgaTAAACCCTTTCAATGTTACATTTGCAAGAAGAgttttcgcaaaaaaaaaagtttaatcaaTCACAGAAATAAtcacaaaaagaaaagatcTTTTGTTTGTGATGTttgcaaaaaatcttttgtaacAAAACATCATCTCAATGGTCACAAAGAGTTAcatacagataaaaaaaactacgaGTGCGATTATTGTAAAGAGGGTTTTCTGAATAAGTTCAAATTAAGGACTCATGTGATAAAACATATGCGTGCACAGACACATGGAAGACCTTTCGAATGTGATATTTGTAAGAAAATGTTCAGGTTCATAATGTGGTTAAGACTGCATATAAAAACTCATAGGGAAGATGATGAGGAAGTTATTATTGAGACTGATAATTCTAAGGGAAATTCAAGTAGGACAACAATGTCTGATGCGGACGATCAAATAGTTAGTATTGCGAAGaccaaaaagaaaagaaagaaaagaaagaaaggtaTAAAAGataggaattttacaaaactacAACCTCTGGAATGTATCGTGTGTAATCAACACTTTAGAAGCGagcgaaattttaaattgcaccAGATGTCTCATGAAAAAgatcaaaattatatagaaagtacaatatgtaaaaaatctgTGCCTGATGCTCGTCCTTGTCAGGCTTTAGGAAAAGATATAATAGTTAGAGTAAAGACTGAAACTGTAGATGAAATTGAGGACATAGAGAATAGTCATTTACAAAATGAAGCGACGTCGATTTGCGAAAAAACGACTGAGAGTAATGAGTCGAATTCAGATTTTGTAAAGAAGGAATCTGAGTATTTGTTAGATGAAGgttttgaaatagaatttgaatgtgtaaaacatgaaattaaaGAGGAGTTTGGgaaagattaa
- Protein Sequence
- MFASQNRLDEHQRVVHLEKKLYKCKQCKKKFSDKDKLKDHYTNTHYGKGAAYECTICGDRFRSKQRLSNHHKFVHKVRCTLKCDICKEKFRARYDLKLHRKTHMEDKKPFKCSKCPKAYSKAHYLKRHLPIHKNKKRFVCNVCSKGFISLCYLNNHKRSHLVKKKKYECQVCGKGLTSSSNLKVHENTHLGIKPFECDICKKSFTVKCNLKQHIFTHRKTKRYSCDVCSKRFALLTYLNIHKKIHTDNIQVKPHECKTCGKRFIKSRDFNAHMRVHTGEAPFECKNCKKQFKHASTLRKHMKSHTEGIIQPFKHKKKIINDKPFQCYICKKSFRKKKSLINHRNNHKKKRSFVCDVCKKSFVTKHHLNGHKELHTDKKNYECDYCKEGFLNKFKLRTHVIKHMRAQTHGRPFECDICKKMFRFIMWLRLHIKTHREDDEEVIIETDNSKGNSSRTTMSDADDQIVSIAKTKKKRKKRKKGIKDRNFTKLQPLECIVCNQHFRSERNFKLHQMSHEKDQNYIESTICKKSVPDARPCQALGKDIIVRVKTETVDEIEDIENSHLQNEATSICEKTTESNESNSDFVKKESEYLLDEGFEIEFECVKHEIKEEFGKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -