Sjap012565.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01006917.1:28917-30942[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-08 5.7e-05 23.1 0.0 2 40 33 70 32 73 0.92 2 2 7.4 7.2e+03 -2.8 0.0 29 38 534 544 534 547 0.85
Sequence Information
- Coding Sequence
- ATGCCGTCGagagtgaaaaagaaaacCGTTGAGAAAATTCCTAAATCACCTTCAGCTACAATCAGTAAATCTAAAAGGACATTTTTCACATATTCAGAagctgatttaaaaaaagccttggaatcaattaaaaatggaaCCGCTATTGCAGCAGCCagtaaacaatataaaattccaagaacAACGTTGCGTAATAAACTCCAAGGAAAAGCACCAGAAACTTTAGGTCGTGTTGGTCCGGAATCTGTACTTGGTCACATTATCGAAGATAAATTGGAGGAGTGGTTATTAGGAACTAGCAGAATGggtttttcaataaataaagacTTCTTGATACACTCTGTCAAGCAATTAGTGGAAGCAGAAGGCTtaagaaatccttttaaatataatgttcCAGGAAGAAAGTGGTTTGAAGATTTTCGCAGGCGTCATCCACGTGTTGGACAAAAAAGAGCCGAACATCTTTGCAGGGCTCGGGCAATCGTCACTAAAAATGGCATCCGTTCTTGGTTTTCTCATGTGGCAAAAGAGCTTAGCGAAAATGTCAAAATACTTAAAGATCCTCGAAGGGTTTTTAATATGGATGAAACGGCGATGCATCTTGCGCCAAAAGGTGGTCTTGTCTTAGCAGAGAGAGGAAAAGCTGTCTATGATATAGCTggtaatgaaaaagaaaacgtaACTACACTGTTTAATGTGAATGCTGCTGGAGAATTTGCGTCAccattaacgatttttaaatacgAACGTTTACCCAAAATTTGTGTTGATTCTGCTCCAAAAGATTGGGGAATAGGGAAATCGGAGAATGGATGGATGACTAGTGAATCTTTTTATGAGTATTTCACCAATGTTTTCTACccatttcttgaaaaaagtgGAATTGAACTCCCTGTGATTGTTTTCTTAGATGGTCATGTTTCTCATATGTCTATCCATCTGAATGTCATCAAGAGTGGATTTAAAGTTTGCGGTTTATGTCCATTTGATGCTAACGCAGTTGATTATAGTAAATGtgttgaaataaaagattctgaaaattctcAAAGGGAATCAAACGAATCCGATTCACGAAAATCAGTAAAAGTTTTATCTTATCGGGAATACgttgaaagtaaaattgaCGCTGACGTTTTACaacgttttaaaaatgcaagaaCCACTGGTTTTGGTTGGGAAGCTGATGACCAATATGAGGTTTTGTATGATCTTTGGATCAAGACTGTAGAAGATGATACACATGAAGAGAATGAATTGCCATCTTCATCTTGTCTTCCTGTAGCATCTGAAAATCCTTCTTCTTTCACTTCCAATGATAACAATGTCATTGAATTTTCGTTTCCAGAGTTTCTTACGCCTAATCTTGAGGAATTCGAAGAACAATTGGAATCTTCAAAGTCTCATAGCCCTGACCAAAACTCCGATTGTGGAGTACCTCTTTTACCTGAACCTCCTATCCACCTAGATATTAGTGAAGATCCAAATGATGTTAGAGCAGTTCTTCCTTCCAGTGATGAAGTTATCCAATCATCACCTGTTATTATTGAAGTAATCGAACCTGATGTATTTTCTACCGCTAACAAAGAAAAtgtatctaattataatactcTAACGATACGTCGAAAGTCTTTAGATGAAGCTATGGATGAAATAATTGTGTGA
- Protein Sequence
- MPSRVKKKTVEKIPKSPSATISKSKRTFFTYSEADLKKALESIKNGTAIAAASKQYKIPRTTLRNKLQGKAPETLGRVGPESVLGHIIEDKLEEWLLGTSRMGFSINKDFLIHSVKQLVEAEGLRNPFKYNVPGRKWFEDFRRRHPRVGQKRAEHLCRARAIVTKNGIRSWFSHVAKELSENVKILKDPRRVFNMDETAMHLAPKGGLVLAERGKAVYDIAGNEKENVTTLFNVNAAGEFASPLTIFKYERLPKICVDSAPKDWGIGKSENGWMTSESFYEYFTNVFYPFLEKSGIELPVIVFLDGHVSHMSIHLNVIKSGFKVCGLCPFDANAVDYSKCVEIKDSENSQRESNESDSRKSVKVLSYREYVESKIDADVLQRFKNARTTGFGWEADDQYEVLYDLWIKTVEDDTHEENELPSSSCLPVASENPSSFTSNDNNVIEFSFPEFLTPNLEEFEEQLESSKSHSPDQNSDCGVPLLPEPPIHLDISEDPNDVRAVLPSSDEVIQSSPVIIEVIEPDVFSTANKENVSNYNTLTIRRKSLDEAMDEIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -