Sjap007764.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- clz9
- Assembly
- GCA_900474275.1
- Location
- UCOH01012338.1:71689-73131[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-09 2.6e-06 27.4 0.0 2 36 17 51 16 55 0.91 2 2 7 6.8e+03 -2.7 0.0 5 15 331 341 330 350 0.72
Sequence Information
- Coding Sequence
- ATGTCTAAAACCGTGAGAAAGCAGATGACGAGAGAAACAACTTACACTGAAGCTGATGTGGAAAAGGCcttaaaggaaattaaaaatggcaTGTCAATACGAAATGCGAGCAAATTGTTCCAAATTCCCAGAACTACCCTTCTTTACAAACACACAGGAAAGTCTCCAATTTCAGCCAAAAAGGGTCCAGCTCTCGTACTaacagaaaaagaagaaactcAGCTTAGGAAAACGCCATTTTCTGATGGTCGACCTGGTCGTCACTGGTATGAAAAATACCTTCGTCGACATCCAAAACTGGCACAAAGAATTGAAGAAAACTCGACAGAAAGAAAAGCACCattatcagaaaataaaataagaaactgGTTTCTTGAAGTGAAGAACTTTCTGCAAGAAAAAGAGCTTTTGGATATACACCCATCTAGAATATTCACCTGTGATGAAAGTGCCTTCTTTTTAAGCCCTGAGAGTGACAAAGTCATTATTCAAAGAGGCTCAAAGGCAGTTTATAATTTAGCAAAAAGCAATGACAAAGAATGTCTGACAAGCATGTTCACTGCTAATGCTTTAGGAAATTTAGCACCTCCGATGGTTATGTTTCGATACCAAAGGACCCCATACAGTATTACTACCAGTATTCCTGATAATTGGGCTCATGGAAATTCGGAAAATGGATGGATGACTGGCAGAACCTTTTATGACTATATAACTGGTGTCTTTTACCCTTGGcttctagaaaataaattcgaattccCAATAGTTCTTTTCCTAGACAAACATTCTTCTAATCTCACAATGCCTTTAAGTCATTTTTGTGCagagaatagaatagaattaaTTCCTCTGCAACCGAATGCTACACACATTATCCAGCCTTTGGATGTGGCTTTTTTCCGACCAATGAAAGCAGCTTGGAAAGACATCATGCAACAGTGGAATGTagataattttgaaaggaaGTTTAGGAAAGAGGATTTTGCTTTTGCGTTAAAGCAGGCAGTAGATTATGTTTATGATGGCGAAGGTCTCAGAAATGGTTTTATGAGTTGTGGATTGTGTCCTTTTTCTTCGGAGGCAATAAATTACTCTTTGATTAAAGATTCTGCAGCCTATAAAGAAGTAAGACTCTTGGGTAGTAAGTCATCTGCGAATACGTTTGAAAATGAACACGAGAAGTTTCTGCACTTGTTTGAAATGTATTTGCCGGATGATAAATTAACTGCATTTAAGGAAAATGCAAATAATCCACTCTGGATGGGAGACGAGAAGGATACgaaccttttttatttttggatgAATGCTAGAATGCTTGGTAATGGTTCTGTGGATATAAACGATATCTGA
- Protein Sequence
- MSKTVRKQMTRETTYTEADVEKALKEIKNGMSIRNASKLFQIPRTTLLYKHTGKSPISAKKGPALVLTEKEETQLRKTPFSDGRPGRHWYEKYLRRHPKLAQRIEENSTERKAPLSENKIRNWFLEVKNFLQEKELLDIHPSRIFTCDESAFFLSPESDKVIIQRGSKAVYNLAKSNDKECLTSMFTANALGNLAPPMVMFRYQRTPYSITTSIPDNWAHGNSENGWMTGRTFYDYITGVFYPWLLENKFEFPIVLFLDKHSSNLTMPLSHFCAENRIELIPLQPNATHIIQPLDVAFFRPMKAAWKDIMQQWNVDNFERKFRKEDFAFALKQAVDYVYDGEGLRNGFMSCGLCPFSSEAINYSLIKDSAAYKEVRLLGSKSSANTFENEHEKFLHLFEMYLPDDKLTAFKENANNPLWMGDEKDTNLFYFWMNARMLGNGSVDINDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01394211; iTF_01393442;
- 80% Identity
- -