Sjap020525.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01009908.1:21498-22711[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 3.6e-06 27.0 0.0 1 34 42 75 42 79 0.92 2 2 1.6 1.5e+03 -0.6 0.1 12 23 134 146 133 148 0.75
Sequence Information
- Coding Sequence
- ATGCCAAAAAAACGGACACAGTCGGGGACAAAAAAGCAACAAAAGTCAACTAAGAAAAACGTGTTGTGCTctaatgaaagaaataataattctaagaaaaaaaaagttaaacgGATTAATTATGATCCAGAAAATATTGACAAAGCTTTGAAAGCTATGAATGATACTGGACTTTCTTTAAGAAAAGCTGCCGCTGCTTATGGCATACCAGTAGCCACACTaggcagaaaaaaaatattgatcctgagaaaattaaaagcaaaacAGGTCCAGAAACAGTTTTATCAAAGTAGGAAGAGTATAATATTGTCAAcTACAGAAAAAAAGACTCCATTCACCGATGACCGTCCAAGTCGTCATTGGTATGAAGGATTCCGGAAACGTCATCCCGAATTGTCAATTAGAAAAACCCAGCATTTGAGTTTGAGCAGGGCAGCAGTCAGCCAAGAAGATCTGCAAGATTGGTttgaaaattatggaaaatatttatcaagaaaaaatttattaagtattCCTCCGAGCAGAATCTTTAATTGTGATGAGAGCAGTATACTTTTATGTCCCGATGCTGAAAGTGTTCTAGCTGCAAAAGGAACTCGGGCAGTGTACAAAATTGTTGATGGTGGTAAAGAGGCTTTGTCAGTATTGTTTATGTATCGAGCTGATGGTACTCGTCCTCCTCCAATGCTCAtgtattcatataaaaaaagtataccgaagaaaattattgataatacTCCTACAAGCTGGGGTATTGGAGTATCAGATAGTGGTTGGATGACAACAGAAACTTTCTACGAATATATCACAAATGTGTTTTACCCATGgcttattaaagaaaacactGAATTCTCTGATATTGTTTATATGGATAACCACTCTTCACATCTCAATTTGCCTCTGGTAACTTTTTGTCGAGAAAAACACATAGAACTGATCATGTTACCACCTAATTCCACTCACATTATGCAACCACttaatatatcatttttcCATCCCTTTAAAGAgacgtggaaaaaatgtgtcccaaagcggaaaaatattaagaaagaaGATTTTCCTCTCGTCCTTCAATTTACTCTGGACAATATGAAAAATGCAGAGACAGTGGTTGTTAGTGGTTTTAGAGGATAA
- Protein Sequence
- MPKKRTQSGTKKQQKSTKKNVLCSNERNNNSKKKKVKRINYDPENIDKALKAMNDTGLSLRKAAAAYGIPVATLGRKKILILRKLKAKQVQKQFYQSRKSIILSTTEKKTPFTDDRPSRHWYEGFRKRHPELSIRKTQHLSLSRAAVSQEDLQDWFENYGKYLSRKNLLSIPPSRIFNCDESSILLCPDAESVLAAKGTRAVYKIVDGGKEALSVLFMYRADGTRPPPMLMYSYKKSIPKKIIDNTPTSWGIGVSDSGWMTTETFYEYITNVFYPWLIKENTEFSDIVYMDNHSSHLNLPLVTFCREKHIELIMLPPNSTHIMQPLNISFFHPFKETWKKCVPKRKNIKKEDFPLVLQFTLDNMKNAETVVVSGFRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -