Sjap010041.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_900474275.1
- Location
- UCOH01012491.1:51902-54641[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-11 6.9e-08 32.5 0.0 6 40 28 61 23 65 0.89 2 2 8.3 8e+03 -2.9 0.0 30 38 109 117 109 119 0.84
Sequence Information
- Coding Sequence
- ATGGCCTGTGGAAAAGATCCAGaactTTACTGTCCGACTAAAAGAAGAAGATATACAATGCAAAAATCTGAAGATGTGGTAAAACTTGCAATGGAAGCTGTTGCAAATGGAATGTCGTTGAGAAAAGCAGAAGTCCTTTTTTCTATCTCGAAGTCTGTACTTCATCGATATAAGAAGTACGGAATACCTATGAATATAAACAAACAACGAGTTTACGTGAGAAACATGGATGAAATATACGATAACAaatctcgAAGGCAGGGAGGTTCAAACGGTCAACGGGTCACCTATCCCTGCAAGAACTGTGGGAAAGTctacaattattattcaagTTTAGCAAGACACCTGAAACATGAATGCGGTGTtgatccaaaatttttctgtcCTTTATGTCCTTATAGGACGAAACATAAATCAAGTTTAAATACGCACTTAAATGGAAGGCACATGAAACTTCTCAGTGACTTCTACAACGTGACAAATGGAAATAGTTCAGCTTCGGAAGGAGGAGATGCAAAATAA
- Protein Sequence
- MACGKDPELYCPTKRRRYTMQKSEDVVKLAMEAVANGMSLRKAEVLFSISKSVLHRYKKYGIPMNINKQRVYVRNMDEIYDNKSRRQGGSNGQRVTYPCKNCGKVYNYYSSLARHLKHECGVDPKFFCPLCPYRTKHKSSLNTHLNGRHMKLLSDFYNVTNGNSSASEGGDAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392375;
- 90% Identity
- iTF_01392375;
- 80% Identity
- iTF_01392375;