Sjap001120.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- lolal
- Assembly
- GCA_900474275.1
- Location
- UCOH01011691.1:12453-20192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-13 7.7e-10 38.7 0.0 1 43 348 391 348 393 0.93
Sequence Information
- Coding Sequence
- ATGGCGACCCAACCGGAGAGGTGCTGTTTGAAGTGGAACAGTCATCAATCAAATTTGATCCGATTTGTTGACAATTTGCGGGCAAAAGAAGACTTCACTGACGTCATTTTGATATCAGATTCTAGGGATATGATAAAATGTCACAAAATAGTGCTCGCTGCCGGCTccttatattttgaaagaatttttaacaatgtaggatttcaaaatacatCGACTCTCGTCATAACTCATACAGATTTTACATATCTTGAGGCCTTAATAATGTATATGTACCGAGGAGAAATAGATATAGAAAAGAATCATGTAGAGGCTTTGTTACAAGTCGCCAGAGAGCTTgaggtCAAAGGACTTATTAATTTGTCGGAAAAAGAATCAAAAGGATCAATAACGAAGATCAAGAGAGACGAGAATTCATCACCATTTTCGaatTATTCTCCCCCATCACGACCATCATCAACAGAACCACGGATAAAATTTGACCACAGTGGACAAATTCCCAATCCCCTATCACATGcagatttatataattttcatgcagcagcagcagcagccaATCAGACTTTAAATCCAATGTCCTCTCATGGACTTTGGCCGATGCCTGCTTTTCCCTTCGCTCATCCTCATTATTCAGCATTGAATAGATCCTATGTCAACAATTCTGATTCTTCACCCCTGGCAAAGAAAAAACAGATTTCGTCAGCAACAATGGCTATTCCACCCACCCTTTCCCCTACCCCTATTTTACGGACAGCACTTGTTGGCCAAGAAGTTGAAGCAGCACATTCCACATCAGGATCGACTTTGGAACGTGCGGAAAATGGATCTCGAAGCAATGGTTCAGCCATGAGTGGTTCTGCCAATTCTCCCGTTGATAATGAAAGAAGATACAGCACGGACTTTTCTCATCAGGAAGACCCTATGAGTCCTAACACTGATGAGGAAGATGATCAGCATAGGAGAAATTCTCCAGTATCACGACGCAACAGTTTCGCCTCCAGCTCAACAGCTCCTAGAGAGTGGAAGCGTTATAAGCAGTACACTCGGGAGGACATCAATGCTGCCATTGACGTGGTCAGAGCCGGAGAAATGAGTGCTCTCCGAGCATCTCGAAAATTCAACGTGCCATCTCGCACACTCTATGATAAGGTCAAGAAATTGGGAATTGTGACTCAACGACACTCAGGACGACACTCATCCAGAAATGGAAGCGCACACGGAATTAGGATGCGCAACATGGATAATGACAGTGCTCGTTTTCCGTATGGCGTAGGAGGCAATGCTGATGGTAATATTTACCGAAATGCGTATGGATCAACAATTGACTCCATTGAATCAATAAACATGTTAATGAACTTGAATCGCATGAGTCCAACCTCAGGACCGAAAGATGAGCCTGACCCTGACCCTATAGAGGATGACAATTTGGACAATATGGTGGAAGATTTGTCTGTTAGACCCCCATCACAAGAAAGTAGTGTCACTATTCGTCCCGTGACGCCTAAAGAGGAAGTGCCAGACGAAACACCTCCGCCAACTGAGAAATGA
- Protein Sequence
- MATQPERCCLKWNSHQSNLIRFVDNLRAKEDFTDVILISDSRDMIKCHKIVLAAGSLYFERIFNNVGFQNTSTLVITHTDFTYLEALIMYMYRGEIDIEKNHVEALLQVARELEVKGLINLSEKESKGSITKIKRDENSSPFSNYSPPSRPSSTEPRIKFDHSGQIPNPLSHADLYNFHAAAAAANQTLNPMSSHGLWPMPAFPFAHPHYSALNRSYVNNSDSSPLAKKKQISSATMAIPPTLSPTPILRTALVGQEVEAAHSTSGSTLERAENGSRSNGSAMSGSANSPVDNERRYSTDFSHQEDPMSPNTDEEDDQHRRNSPVSRRNSFASSSTAPREWKRYKQYTREDINAAIDVVRAGEMSALRASRKFNVPSRTLYDKVKKLGIVTQRHSGRHSSRNGSAHGIRMRNMDNDSARFPYGVGGNADGNIYRNAYGSTIDSIESINMLMNLNRMSPTSGPKDEPDPDPIEDDNLDNMVEDLSVRPPSQESSVTIRPVTPKEEVPDETPPPTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394491;
- 90% Identity
- iTF_01392159;
- 80% Identity
- iTF_01392159;