Sjap022325.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01012221.1:118590-120059[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-11 4.2e-08 33.2 0.0 3 40 17 53 15 57 0.90 2 2 5e-05 0.048 13.8 0.0 23 44 310 331 290 332 0.76
Sequence Information
- Coding Sequence
- ATGACGCGTAAGAGGAAGCGCACCTCAAACATTGCGAGATGGTCCAGTGATGACTTGCAAGCAGCATTAAAAGCCATAAAAGAAGGGAAACCAATGACACAAGCCTCCGCTTTATACGGAGTTCCTCGTACAACAATTTATAGAAGATTGAAGCGCAATAAATTTTCCGCCCCAAAAATGGGTCGAAAGGCTGTCTTTTCCACCGAGCAAGAGGAAATTCTAACCAAccatataaacaaattacaaCGCACAAGTCCCTTGAACTCTCAAAAAATTCGAAAGCTAGCTTTCGATCTCGCTGAAAAATTACATCTTGATCACAATTTTAATAGAGAGAAACAAGAAGCTGGGCAAGAATGGCTTGCATCTTTTCTGAAACGGAACCCTCGTGCTCAAATTATTAGACGAGGAGAGAAAAGCCATGAGGCGAACGAACTAAACAACGAAAATCCAAATTTCGATGAAAAACCCTTTACGAGTGagactgaaattaaaattaagaatgaaACGATATTTCTGAAGGAGGAAATGGATTTTTCGGATGATTCAGAACCCCTCAATTCCTCTACTGATcctttggaaaatatttccgAGAGTTTTGAGAGGAAccaattcttagagaatttaacgAGTGTCGAAGAAACTGAGGATGAAGTTAAAATGAAGTTGAGAGTGAGGAAAAAGATTCTCGCAAAAAGGGAGAGACGTACTTTAAAGAGTTGCGTTGACAAACCAATCAGGATAGTGGATAGAAGTACCTTTCTTGATCAGCTCGAGAAGTCTAATCAGGTTGTGACTGGAAAGGAAGATAATTTACCCCCATTAAAGAACCGTAGAAAGCGTACGGCAAAAACAGCGAACTGGACAGCCAATGATTTGAACTCTGCTCTCCAAGAGTTAGCACAAGGAAAAACTATGACAGCAGTTTCAGCTTTGTATGGGGTTCCCCGTACTTCAATTTACAGAAGACTGAGACAGAATAACTTTTCTTCTCCAAAGCTCGGTCGAAATTCAGTCTTCACACCTAAACAAGAAGAGTGCCTCACtgattacattttaaaagtctCGAAATTTTGTCCCATGAACACGACACAATTAAGAAGAATGGCTTTCGAATTAGCCGAGAAATTAAATCTGGACCACAATTTTAACAGAGATATGAGACTTGCTGGAAAGGATTGGTTGACGggatttattaaaagaaatcctAGGGCGAATTTTaatggtaaaagaaatttatgtgAAACGGAAAATTACCAAAACGGCAAAAAAGAGTTCTTctatgattttaatgatttagtTAAATCTTTTCCATCCCTCGAATGTCAAACTGTTGATGtatag
- Protein Sequence
- MTRKRKRTSNIARWSSDDLQAALKAIKEGKPMTQASALYGVPRTTIYRRLKRNKFSAPKMGRKAVFSTEQEEILTNHINKLQRTSPLNSQKIRKLAFDLAEKLHLDHNFNREKQEAGQEWLASFLKRNPRAQIIRRGEKSHEANELNNENPNFDEKPFTSETEIKIKNETIFLKEEMDFSDDSEPLNSSTDPLENISESFERNQFLENLTSVEETEDEVKMKLRVRKKILAKRERRTLKSCVDKPIRIVDRSTFLDQLEKSNQVVTGKEDNLPPLKNRRKRTAKTANWTANDLNSALQELAQGKTMTAVSALYGVPRTSIYRRLRQNNFSSPKLGRNSVFTPKQEECLTDYILKVSKFCPMNTTQLRRMAFELAEKLNLDHNFNRDMRLAGKDWLTGFIKRNPRANFNGKRNLCETENYQNGKKEFFYDFNDLVKSFPSLECQTVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394198;
- 90% Identity
- iTF_01394198;
- 80% Identity
- -