Sito012273.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus itoensis
Gene Symbol
-
Assembly
GCA_904066005.1
Location
CAJFCP010026121.1:76147-80971[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.00048 0.066 14.5 0.3 1 21 134 154 134 155 0.94
2 8 0.003 0.4 12.0 2.2 1 23 163 185 163 186 0.96
3 8 0.00066 0.089 14.0 0.4 2 21 283 302 283 303 0.94
4 8 9.8 1.3e+03 0.9 2.3 1 8 310 317 310 318 0.89
5 8 0.012 1.6 10.1 0.2 1 21 415 436 415 437 0.94
6 8 0.00043 0.059 14.6 0.1 1 20 552 572 552 574 0.94
7 8 0.0017 0.24 12.7 1.0 1 21 634 654 634 655 0.96
8 8 0.0094 1.3 10.4 2.8 1 21 804 825 804 835 0.95

Sequence Information

Coding Sequence
ATGGATCGATTGAAGTTCGATAATTCGAGAGCTGTCGATACAACAATATGGCCGTTTGACAGATGCAATTGTGATGCAGTTTCTTGTTTTGATCTTCCCTTGAATCAGGATTCTGATATTTTCGTAAATTTTGCCTACATGGCTTATGTCGATGTTCCAATCTCTAAAGACCCCAGGGTCAAATTAAAGGTCGAAGTTGAAGGTATAACACCCAGAAGTCTACGATCATCTTCGCGAAATTCAAAAATAAACTTCAAAATCACAAGATCAAGATCACGAAAAGTAAATAAAAATCAACGTCTGGATCAGCGCAGCAAATTGAAGATTCCGATAACATTGAAAGACCTTAAACCCAAAATTTTACATAATACATTAATTCCCATAAAGAAAGCCAACACATTTATTTGTCCGAAATGTGGTAAATCTTACAAAAACGAATTCACTGCAAAATCTCACATAAATCTTGTCTGCGGAGTGTCGCCTCGTTACAAATGTCCGTACTGTGACAAAGCTGGCAAATATTATTTCAATATCATTAGCCATGCAAAGAAACATCATCCAGGTTTGGATAGTTACGCTATCGACACTGTCACAAATCAGATCAAACGTTTAATAAAAGAATTAAACAAAAATCCTGTTACCCATTCTTCTGCTAGAAATTCAATTTTAGACAAGAAGCCCATTTTGTTGAGAAATCAACTGCAGGATTCTTCTCTTCAGCCTGGCCCTAAAATTACGAATTCCCGACGTCAAAAAAGCATCACCATCAAAGAGGAAAAGAACGTTACTAAAAAACCAGATCTTTTAAACAATGCAAAAGATTCTTCGCGAAAGTTGCAACCGAACACTTGTCATATTTGTCGGAAATCTTTTACATTAGAATACGGACTTTCTAGACACATTTTGGAAGGATGTGAGCAATTTCGCTATAGGTGTCCGTACTGCCATTACCAAGAACAAAGATTATTTGTTGCTTTCTGCCACTTAACAAAGGAACACCCAGGATCGAAGATTTACATGGTCGACAATGTTACTGGAAAAAATGTGGAACTAGGATCTGTCGTGAAAATGAATACTCCTGAAGCTGACGAACCTAATGATACTTTAAGTGTGGAAAATATTGATAGGAATGAAATTCTTGCCAAGAAAACAAGTGATGACGAAGTCAAAAATCCCTTGAACAACTTAGTGAAAAAATTTCAGGAGAACTCTAGGCGGTTCCAGAAGGTCTTGAATAAGGAGTATGAATGCCCTAACAAATGCGGAAGGTTTTTTGGAAACTCTCGCAGCATTGTGAATCACGTGAAACAATCTTGCGTCAAAGTCAACAGATTTAAATGCCCGCATTGTTTAGAGTTGTCTCACGCATTTAGATTTATCGTTATGCATATTAAAAAAAATCACCCCGAGGTAAATATTTATGCTATTGATATTAAAAAGGGACAGATCGTCTACGATAACCCACATGCTCAGTCAAGAAGGAGGAGAAGAGAAAATAGGGAGGATAATTCAAAGAAAGAAAATCCCAAAAAAGAGAATTCAAAGAAGATAAAAGATATTCCGAAAGAAGATAATCTGGAGATAGATTCAAATACGTTGCAAAATGTGCCAAAGTTTTCGAAGATGGCCACTAAAATAAAATGCGAGAAGATTTATCCGTGTTCCAATGGCTGTGGTCAAGTTTTTGAATACCAAAGTAATATGAAAGCTCATACAACGCGAACTTGCAAATTTAGTTCGAGCATTACTAGTCACATAAATGATTGTCATCAAAATTTAAAAAATGATTTCACTGACATAGTGAAAGTAGAAGGTCCCGATTCCATAAACTGTGAGAATAATGAGAGTAGTGAACCGTGCAAAGAGCAAACTTTGTGTTCTGAAGAAGAAAAGTCTGTTTTTAAGTGCTCCATCTGCAATATGATTTGTAAAAGTTCAAGCAAAATGTGGGCTCATATTAAACAATGCTATGGCACAAGGAATATGAAGATAGAAGCTAAGAATGCTGACTTGGATAATTCTATTGAACAGGTTCAGATCCAAGTTGATTTAAATGAAGTTGAATCAACCGAGAACCAGAAGAGAATCGAAGATGTACCTATTTCAAGAGAAGTTTCAAGCGATTCAAACAATCACAATTATGCGGATATTTCAGAAGAGGCAGTTAATGATGAAATGGAGACGAATAATTTTATCGACGAATCCGATGAGATTGATGAATCAGATGATGAAATCTCGAGGAATGATTTAACCGAGGAGGAAATTAATGCAGAGATTTTGAAGTTTTTGGAGACTAAGGAAACAAATGTTGAGGATGTTAAAGAAGTTGAAAAAACTCAAGAAGCTGAAAAGAGTGAAAAAGTTAAAGATCGAATGACGAGAAACATTGTGAATCCATTTTCAAAGAAGTTTGCGTGTCCCTATGAGTGTGGCTCGAATTATACTAGAGAATCGACATTGAAAAGTCATTTACGCTTTCAGTGCCAACATCTAAAAACAATGCACACTAATCAGGAAACTTATCTGAATGACGGTGTTACGAACACAGAAATTTATAATTCAGACCTCAAAAAAATAGACCTTCAAAAAGTCGTTGAAGAAGATAATGAAGAAGTTGCAGAGTTTAGCAGTGAATCGACTCATGATGCCGAAGAACTTGATGAACCTATTATTGAAGTCAGAAACAATGTCCTGCCATCGGTTTACAAATGTCCGTTCTGTCGATTTTATACAGAAATACCTGAGGAAGGATATGAGCATATGAAAAGAAAGCATCCCAATGAAAAGGCGTTTATGATTGGTATCAATACTGACAGTGAGGATGAAGTAGAGCATGCTGGTGATGTCATCTAA
Protein Sequence
MDRLKFDNSRAVDTTIWPFDRCNCDAVSCFDLPLNQDSDIFVNFAYMAYVDVPISKDPRVKLKVEVEGITPRSLRSSSRNSKINFKITRSRSRKVNKNQRLDQRSKLKIPITLKDLKPKILHNTLIPIKKANTFICPKCGKSYKNEFTAKSHINLVCGVSPRYKCPYCDKAGKYYFNIISHAKKHHPGLDSYAIDTVTNQIKRLIKELNKNPVTHSSARNSILDKKPILLRNQLQDSSLQPGPKITNSRRQKSITIKEEKNVTKKPDLLNNAKDSSRKLQPNTCHICRKSFTLEYGLSRHILEGCEQFRYRCPYCHYQEQRLFVAFCHLTKEHPGSKIYMVDNVTGKNVELGSVVKMNTPEADEPNDTLSVENIDRNEILAKKTSDDEVKNPLNNLVKKFQENSRRFQKVLNKEYECPNKCGRFFGNSRSIVNHVKQSCVKVNRFKCPHCLELSHAFRFIVMHIKKNHPEVNIYAIDIKKGQIVYDNPHAQSRRRRRENREDNSKKENPKKENSKKIKDIPKEDNLEIDSNTLQNVPKFSKMATKIKCEKIYPCSNGCGQVFEYQSNMKAHTTRTCKFSSSITSHINDCHQNLKNDFTDIVKVEGPDSINCENNESSEPCKEQTLCSEEEKSVFKCSICNMICKSSSKMWAHIKQCYGTRNMKIEAKNADLDNSIEQVQIQVDLNEVESTENQKRIEDVPISREVSSDSNNHNYADISEEAVNDEMETNNFIDESDEIDESDDEISRNDLTEEEINAEILKFLETKETNVEDVKEVEKTQEAEKSEKVKDRMTRNIVNPFSKKFACPYECGSNYTRESTLKSHLRFQCQHLKTMHTNQETYLNDGVTNTEIYNSDLKKIDLQKVVEEDNEEVAEFSSESTHDAEELDEPIIEVRNNVLPSVYKCPFCRFYTEIPEEGYEHMKRKHPNEKAFMIGINTDSEDEVEHAGDVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01390657;
90% Identity
-
80% Identity
-