Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010000098.1:3067693-3070385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.4e-05 0.011 16.9 0.9 1 23 83 106 83 106 0.98

2 10 0.075 10 7.6 2.9 1 23 175 198 175 198 0.90

3 10 0.28 38 5.8 0.0 2 21 275 294 275 295 0.93

4 10 0.00052 0.07 14.4 2.7 1 23 450 473 450 473 0.97

5 10 0.037 5.1 8.5 1.8 2 23 480 501 479 501 0.95

6 10 0.00044 0.06 14.6 1.2 1 21 506 526 506 527 0.93

7 10 3.3e-05 0.0045 18.1 3.0 1 23 534 557 534 557 0.97

8 10 0.00061 0.083 14.1 0.8 1 23 561 584 561 584 0.97

9 10 0.00021 0.029 15.6 0.2 1 23 589 611 589 611 0.97

10 10 0.00066 0.09 14.0 0.7 1 23 617 639 617 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.4e-05	0.011	16.9	0.9	1	23	83	106	83	106	0.98
2	10	0.075	10	7.6	2.9	1	23	175	198	175	198	0.90
3	10	0.28	38	5.8	0.0	2	21	275	294	275	295	0.93
4	10	0.00052	0.07	14.4	2.7	1	23	450	473	450	473	0.97
5	10	0.037	5.1	8.5	1.8	2	23	480	501	479	501	0.95
6	10	0.00044	0.06	14.6	1.2	1	21	506	526	506	527	0.93
7	10	3.3e-05	0.0045	18.1	3.0	1	23	534	557	534	557	0.97
8	10	0.00061	0.083	14.1	0.8	1	23	561	584	561	584	0.97
9	10	0.00021	0.029	15.6	0.2	1	23	589	611	589	611	0.97
10	10	0.00066	0.09	14.0	0.7	1	23	617	639	617	639	0.98

Sequence Information

Coding Sequence: ATGCTTTTTTCACTAAACCAAACACCAGGAGACCCTTTATTTATTCCTTGGCCTAATTGCAAAGCAGCTAACGAATTTCCAAGTAGTGTCTCATCGATTAAATCAAAAAACCCAAGTGGACCGACTCCAAATAACGTCAAAGGGCCGCCTCGACCATTATATTTATGTGAGCACTGTGAGTTCACGAATTGTGACAAAGAGATTACAGAAAGTCACATCAAACAATCCCATAATCTCCAGCAAGATTATACTTGTAAAGATTGTGACAAATGGTATAAATCTTACGATCTTTTGAGAGAGCACATAAAACGAGTTCACAGAAAATTACCATACATTTGTGGTACATGTGATTTTAAAGCCAAGGAATATGGGAATTCTCGTGTGATGTGGTTCCACATGAGGGCTAGACACGTAAGCATCACTGGTGACAGTAATATTCCCTTAACTTGTAAAATTTGTGGATTTAAAAACACCAGTCATGGCATGTGGGATCATATGGAAAATAATCACATGAAAACTTATCATCATTGTGGAATTTGCAAGTATTACTTTAGCTCACAATTAAAACTTCGATTGCATAAAGCCGAGAAACATTCCAAGAAACTTTCATCAAAAAAAAGAACCAAGTCTCAGAAGGAAGGCAATAGTTTCATATCAATTGCACCTAAAATAGCTGGTCTTGAATATCCTCCCACGCCTCCATTGCATCCAATTGTATCAATTATTACTCGTCCGATAGTGTCTACGATTCCTCCTATTTCATTTAAATTTCCCTCAACAGAAAGTACCCGTTTAAAATATAAAAGTTTTTTGAGAAATCGAGTATGCCTCGTTTGTGGCGTTGGCTATGATGTAGATTCTAATTTACATCAGCACCTGCAAAAGTTGCAAGAAGATGTCGATGCTAGTTTGGCTCCAACGTACATTAATGTCTCATCGGAAACACCAAGATATATTGTTAGGCAAAATAATGATAAGATTGAAATTATCCTTGACAATAAAATGGAAACAGTTCTATTTTGTTTTAGTTTCACGATTGCCTGCAATTGGACAATTGGAAAGGCTTCTGATGAAAACGTCGAGTTTAATATTGAATGTAAGGAAGAACGGCTAGATAGAGAGAGTGAAGACGAAGATAAATTAATGGAAGAGGCAAGTTTGGTCAACCCTTTAGCAGATCAAGAAAACAATTCCTTGAAGAATGAAGAAAACAATTTGGACATGTACGAAAGAAATCAAGCTGCGTTCTACAATTCAACTGATAACTCACACAATGAGAGCACTTCGATCGCTGATTGTCCACCTCTTCCTCTTGAATGTGTTTTAGTTGATGAAAAGCAGACAATTTTTCCGTGTGAATTGTGTGAAAAGATTTTTAAATATAAAAGAGGTGTGCGGGAACATATGAAACGTTGTCACACCCAAGCTGAAACTGTAGAATGTTACATTTGCGGAGCTAAATGCAGCAATTTTTATTTGACTCGTCATATCAAAAATCGACACACGAAACCTGCCTTTGAGTGCACAAAGTGTGGCAAAGGTTTCGACAAAAAAGAAAAATTTAATATCCACAAGAGTACCAAGTGCAAGAAATCTGGTTTTAAGTGCAAAAAGTGTGGACAAATTTTCGAGAAGAAATATAATCTTGATACCCACACACGTAACACACACAGAAAAAGGTATAATTGCCTTTTCTGCAAGAAACCTTTTGCAGATACTGCGAAAGTAAGGTCTCATATGAGAATCTATCACGATTTGAGACCTTTTCCTTGTCCCGCTTGTAATAGGCCTTTTACGACTAAACAAGCAATGAATCAACATTTACTCTTGCATACAGGAACACGTCCTTATGTTTGTGATATCTGTGGAGATACCTATATTCAGAAATCTAATCTCACCTTTCATAGGAAGAGCCATCCTGGACCACTTCCTCCGATGCCACCTACATCTGTAGCTCATATTGTGGATAAATTTACTCAGATGTTGGAGTTCAAACATCGAAGAGAGGGAAAGGCTAAAAAGAAAAAGGATAATAAGAAGAAAATCCCTGATGAAGATTTTAGTTCAAAGGGAAGTGAAACAGAACAAATTAAGAAAGAAATTTAA
Protein Sequence: MLFSLNQTPGDPLFIPWPNCKAANEFPSSVSSIKSKNPSGPTPNNVKGPPRPLYLCEHCEFTNCDKEITESHIKQSHNLQQDYTCKDCDKWYKSYDLLREHIKRVHRKLPYICGTCDFKAKEYGNSRVMWFHMRARHVSITGDSNIPLTCKICGFKNTSHGMWDHMENNHMKTYHHCGICKYYFSSQLKLRLHKAEKHSKKLSSKKRTKSQKEGNSFISIAPKIAGLEYPPTPPLHPIVSIITRPIVSTIPPISFKFPSTESTRLKYKSFLRNRVCLVCGVGYDVDSNLHQHLQKLQEDVDASLAPTYINVSSETPRYIVRQNNDKIEIILDNKMETVLFCFSFTIACNWTIGKASDENVEFNIECKEERLDRESEDEDKLMEEASLVNPLADQENNSLKNEENNLDMYERNQAAFYNSTDNSHNESTSIADCPPLPLECVLVDEKQTIFPCELCEKIFKYKRGVREHMKRCHTQAETVECYICGAKCSNFYLTRHIKNRHTKPAFECTKCGKGFDKKEKFNIHKSTKCKKSGFKCKKCGQIFEKKYNLDTHTRNTHRKRYNCLFCKKPFADTAKVRSHMRIYHDLRPFPCPACNRPFTTKQAMNQHLLLHTGTRPYVCDICGDTYIQKSNLTFHRKSHPGPLPPMPPTSVAHIVDKFTQMLEFKHRREGKAKKKKDNKKKIPDEDFSSKGSETEQIKKEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392329;
90% Identity: -
80% Identity: -