Sito012279.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010026121.1:90481-105772[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.8e-06 0.0012 19.9 1.7 1 21 56 76 56 77 0.96 2 11 0.00055 0.075 14.3 0.3 1 23 141 164 141 164 0.95 3 11 0.26 35 5.9 0.3 1 21 242 262 242 263 0.96 4 11 0.29 39 5.7 1.0 1 22 309 330 309 330 0.97 5 11 9.1e-05 0.012 16.7 0.5 1 20 960 979 960 981 0.94 6 11 0.0023 0.31 12.4 1.8 1 21 1002 1022 1002 1023 0.94 7 11 0.24 33 6.0 0.4 1 16 1031 1046 1031 1047 0.92 8 11 5.6e-06 0.00076 20.6 0.6 1 22 1075 1096 1075 1096 0.96 9 11 8.2 1.1e+03 1.2 0.5 1 11 1104 1114 1104 1118 0.89 10 11 0.12 16 7.0 3.6 1 21 1153 1173 1153 1174 0.96 11 11 5.2e-05 0.007 17.5 0.9 1 23 1182 1205 1182 1205 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAGAAGAAAGAGACGAAACGTCAACATCTAACTTATTTTCAACTGGGACAAACGAATAGAAATTTTGAATCGAACCTTAGTACATTTAAAACAGTCTACAATCCTCAGAGTCAAAGATGGTCTACAAATCAAGAAAGAAAGGATAAATCTCAAAGAAAGTACCAATGCAATCAGTGTGGAAAAAGTTATGTTCACCAGCCGAATTTATCTCGCCACAAACGTTACGAATTTCAACAACCCTGCTTCGTTAATGTAAAGGAGGAGACATTTTTGTCTGTTTCTGACAGACTTGGGATGAAAGAAAAATTTCAAAGTCGACGACTAAACAAAAATCTAGATGAACCTTATAGTTGGAATGCTGAGGAATTAAAGAATAATTCAAGGAAAAGAAGAGGAAGACCAAGAAGTGGTCCCTACGTTTGTTTTATCTGTGGCCAGATTTTTAATTATAAAGTGCAGTTTTCCATACACCTGAAGGATGCACACGATAAGTGTTCTAAAAAAAATAAAAAACTGGATAACACACTTGCTCATACGAAAAAAATTTCAGAAGAAAAATCTCTTCCCGAGACTACTAATAAATTGAATGAATTTAATTGTGACCAATATTTCGAAATCAAGGAAGAAATAATCGAAGAAGAAAAGAATACTTCGATGACTCTAATAGAACCAACAAGAGTTTTGAAGACAAGAAGAAGAGAAAAAAGTGAAGGACCTTATGTCTGCGTTCGCTGCAATGATACTTTTGACTTAAGAGCATATTTTTTAAAACACATGAGAGAAGATTGCATTACTACTCCTTCAAAGAGGAAGATTAAAAGTGATGAAAAGAAAAATAAAAATTACGTAAATGCTGTTCCCTACACGGAAGAACCTTTTAATTTAAGAGGTGGAAGAGGAAGGAAGAGTAAGGGACCCTATGTGTGTTTTAAATGCAATGATATTTTTAATCTCAAATCGGTTTTCTTGAAACATCAGAGAACTGATTGCTCTCAGGATTGGAGAATTCAAATACCTAGACAGGAGAGTCAGAAAACTGAATTGCAAAAGTATTATTGTGACGAATGTCCACGAAATGAAGGATTAACCTGTTGCCCTGTCCTTGAACTAACGGAAACGGATCTAAACCTAATGGAACTAAATATGGACAGAACGGATTTTGTTGTGCAAGATGATGGATCTCTGATTTCTGAATGTAACGATGAACCCAATGTTTCCCGAAGAATAAGAGTTCGCTCTGATATTCATGAAAGCAGAAATATTTCCTCTACGAGTGGTACCAGCAAAGTGCCAGTACATATGTTTTCGCGTTTTGGATCAGTCAAAGCTACACTTCTTCATCGCCCGGTTGAGGGTGAAGCACTCGTGGCAGCAGCCAATGGTTCATTCACTGAAAATAACAGACGAGCCCTGATGCGAATTCTTATCTCAGAACTTGTCAAAGTTCAGGGAAGCTGTTATCCTCCTGATGAATCAAAGATTTCCCTGGCAAAGGCAATCGTCACAGAGTTTCCTCTTTTGAGAAATCTTCGTACTAAAAAAGGATACGAGCACTATTACGATGAAGAAACAAGGCGAGGTTTTATCGAGTATAGATTATGGAATGTTCGCAGGACTCTCAGTCCATCTCAAAAAAAATATAAAACTAAAAGTCTTGATTCGGGAAAAAATATCTCTTATTCATCAACTAATAATCTGTTACCCAAAGAAGAACTAGATTCAAAGATATCTTGGATGAAGTACAAAGAACCTTCGGAAATCAACAAACAGGAAATTGCAAATTTATTGATGGACACTCTGCAAGATCGGCGAGACTGGATTCTTAAAATGAGCCCCACGATCTCACAAATTTGCAATGAATATCCGCGATTATTAGATTACAATGGTGAGATGATTGATAATGAATTCCGGTACTTCTTTAAAGAGAAAAGTGACAACTTTCTGATCAGATTTCCAACCTATTATTGTCCACGAATTTTGGAATACGTTCGTTTAAATCGTCTCGATGTGTATAATCGCTCACAATATATCACTGATGCAAATCTCCGGGCCCTGTTTATTCTTGCGGATTTGCTTCGAGCTAATAATGCAATGATTAACTCTATGAAAGAAATGCAACAGACAAGTGACAAGGGGAAAGGAAAAGGAAAGGGAAAGAAAAGGCAAAGAAATGCAGATGAAACAGATCTAATAGATAAGGAAAAAGTTGATTACCCAAGTACCTTGTTGGTTCGATTTGAGGGCTCAAATTTACCACAAAGTATTCAAGAAGCAAGTGCTATGGCTAGCACAAATTTACACCCGTACATTGTTTGTACGAAAGAAGAGAATGGCACGGATATATATTTTGTGAAAGGAGATGGTTGGCTTATCAAACCTCGTGATAACAACCCTATAGCTGCTTTTGATTTGCTTTTCAAGGTTTATTTCACCATGAAAGTGGGCTACCCTACAGGACTTCACAATTTCTATAATTTTATTGAGAGCTACGTGTATGATTTGGGCACAAAGGCCCGTGGTGTTGTCACGTCACTACATGTAAATTTAAATCAATACACAAAATTTTGGACCATGGGCGCAGAAGCTTATGATTTTCCGAGCGTTTACAGTAGACTTCCGAACCAAAGGAACCCAGAATTTCAAAATCCTGAAGTTGAACAACCTGTCTACATACAGCCTCATTTTAGAAAACAACCAAATCATTCGAGAGAACGGAGTTATAGTTCATCAAATTGGACACTAGCGACTCTTCCATCAACATCCAGAGGTTTTCAAGAAAGACGTTTGCGTTCCATGACTTCATTCAATGCTTTAAATCGTTCGACTTCTTCTTTCGCCCCAATGAAAAATACTTGCTGGACTTCTCGAAAATACATCTGTTCAGATTGCGGAAGATCCTACACTTTAAAAGCTTCCTTGACTCGACACAAACAATTTGAATGTAATGCTAAAATTTTGAAAGGGAATTCTGAAGTTGGTGACAGAAAACCAAAAGAACATATTTGTGGAAAATGTAAAAGAAGTTACACTTTCTTGACATCATTGTGGCGTCATCAAAGATACGAATGTGGCGTTGAACCACGTTTTATTTGCCCAGTGTGCTATACTAAATTTGCACAAAAAAGGAACTATTGGTTTTCGACTCAACCTTCTGTCTCCGGATACATTGTAAAACCAAGTCATCCAAGTCAAGAAATACAAAAAGGAAAGAGCAGATTTAAGTGTCCGAACTGTGTTAAATCGTATTCTCAAGAAGGAAATCTTAAAAGGCATCAAAAAATGGAATGCGGTGGGATAAAAAAGTTCATTTGTTACGTTTGCAATCGAGGTTTCAACGAAAGAATTTTCTTCAGCGTACCCCCTGGACAAAATGATTATGAGGGATGTGATTGGCAAAATGTGAATAGGAGAGACCAGTCTCAACAAAAATATACTGGAATTGAAGATGTATTTCGCTGTTCTGCTTGTGGGAAAAATTATTCTTGCAGAAAAACTTTGAAAAGACATGTCAGATTTGAATGTGGGGGTCAAAAACTTTTTATCTGCAATCACTGTCCAGCCAAATATTCTCAAAATGGAGCCTTGCGTAGACATTTGTTAAAACTTCACAACGTCTATTTACCACCTAGGAGAAGATTATCACAATAA
- Protein Sequence
- MKKKKETKRQHLTYFQLGQTNRNFESNLSTFKTVYNPQSQRWSTNQERKDKSQRKYQCNQCGKSYVHQPNLSRHKRYEFQQPCFVNVKEETFLSVSDRLGMKEKFQSRRLNKNLDEPYSWNAEELKNNSRKRRGRPRSGPYVCFICGQIFNYKVQFSIHLKDAHDKCSKKNKKLDNTLAHTKKISEEKSLPETTNKLNEFNCDQYFEIKEEIIEEEKNTSMTLIEPTRVLKTRRREKSEGPYVCVRCNDTFDLRAYFLKHMREDCITTPSKRKIKSDEKKNKNYVNAVPYTEEPFNLRGGRGRKSKGPYVCFKCNDIFNLKSVFLKHQRTDCSQDWRIQIPRQESQKTELQKYYCDECPRNEGLTCCPVLELTETDLNLMELNMDRTDFVVQDDGSLISECNDEPNVSRRIRVRSDIHESRNISSTSGTSKVPVHMFSRFGSVKATLLHRPVEGEALVAAANGSFTENNRRALMRILISELVKVQGSCYPPDESKISLAKAIVTEFPLLRNLRTKKGYEHYYDEETRRGFIEYRLWNVRRTLSPSQKKYKTKSLDSGKNISYSSTNNLLPKEELDSKISWMKYKEPSEINKQEIANLLMDTLQDRRDWILKMSPTISQICNEYPRLLDYNGEMIDNEFRYFFKEKSDNFLIRFPTYYCPRILEYVRLNRLDVYNRSQYITDANLRALFILADLLRANNAMINSMKEMQQTSDKGKGKGKGKKRQRNADETDLIDKEKVDYPSTLLVRFEGSNLPQSIQEASAMASTNLHPYIVCTKEENGTDIYFVKGDGWLIKPRDNNPIAAFDLLFKVYFTMKVGYPTGLHNFYNFIESYVYDLGTKARGVVTSLHVNLNQYTKFWTMGAEAYDFPSVYSRLPNQRNPEFQNPEVEQPVYIQPHFRKQPNHSRERSYSSSNWTLATLPSTSRGFQERRLRSMTSFNALNRSTSSFAPMKNTCWTSRKYICSDCGRSYTLKASLTRHKQFECNAKILKGNSEVGDRKPKEHICGKCKRSYTFLTSLWRHQRYECGVEPRFICPVCYTKFAQKRNYWFSTQPSVSGYIVKPSHPSQEIQKGKSRFKCPNCVKSYSQEGNLKRHQKMECGGIKKFICYVCNRGFNERIFFSVPPGQNDYEGCDWQNVNRRDQSQQKYTGIEDVFRCSACGKNYSCRKTLKRHVRFECGGQKLFICNHCPAKYSQNGALRRHLLKLHNVYLPPRRRLSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -