Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010026121.1:16496-25644[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.024 15.9 0.2 1 21 11 31 11 32 0.94

2 11 0.98 1.3e+02 4.1 2.3 1 17 51 67 51 68 0.94

3 11 0.00021 0.029 15.6 0.4 1 22 81 102 81 102 0.94

4 11 3.5e-05 0.0047 18.1 0.2 1 22 129 150 129 150 0.95

5 11 6 8.2e+02 1.6 6.3 1 21 169 189 169 190 0.95

6 11 0.073 9.9 7.6 0.2 1 16 196 211 196 213 0.80

7 11 0.00055 0.075 14.3 1.0 1 22 227 248 227 248 0.94

8 11 8.2e-05 0.011 16.9 0.1 1 21 295 315 295 316 0.95

9 11 2.7e-05 0.0036 18.4 0.2 1 21 363 383 363 384 0.95

10 11 0.0013 0.18 13.1 0.8 1 21 409 429 409 430 0.96

11 11 5.6e-06 0.00076 20.6 1.4 1 22 463 484 463 484 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.024	15.9	0.2	1	21	11	31	11	32	0.94
2	11	0.98	1.3e+02	4.1	2.3	1	17	51	67	51	68	0.94
3	11	0.00021	0.029	15.6	0.4	1	22	81	102	81	102	0.94
4	11	3.5e-05	0.0047	18.1	0.2	1	22	129	150	129	150	0.95
5	11	6	8.2e+02	1.6	6.3	1	21	169	189	169	190	0.95
6	11	0.073	9.9	7.6	0.2	1	16	196	211	196	213	0.80
7	11	0.00055	0.075	14.3	1.0	1	22	227	248	227	248	0.94
8	11	8.2e-05	0.011	16.9	0.1	1	21	295	315	295	316	0.95
9	11	2.7e-05	0.0036	18.4	0.2	1	21	363	383	363	384	0.95
10	11	0.0013	0.18	13.1	0.8	1	21	409	429	409	430	0.96
11	11	5.6e-06	0.00076	20.6	1.4	1	22	463	484	463	484	0.96

Sequence Information

Coding Sequence: ATGTTGAGGGCAGCAATGGAATTGAGAAAATTTCAATGTATCTATTGTGGAAAACCGTTCAATAATGAACAAGGACTTACTCGGCATCAGAAAATAAGTTGCTATTTGACTCCTGGATCAAAATCGCATCATAGCCTTAAATTAAGACTTTTTTCTTGCAAAAATTGCTATGCGTGTTACTCATCGGAGAGTACTTTACAGGAGGACTACCTGCTGAGGGTAGCAATGGAATTGAGAAAATTTCAATGTATCTATTGTGGAAAACCGTTCAATAATGAATATGGACTTACTCAGCATCAGAAAAGATATTGCTATTTGGCTCCTGGATCAAAATCGCATCATAAGGAGGATTGCATGCTGAGGGCAGCAATGGAATTGAGAAAATATCCATGTGTCTATTGTGGAAAACCGTTCAATAATGAACAAGGACTTACTCAGCATCAGAAAAGATTTTGCTATTTGGCTCCTGGATCAAAATCGCATCATAGCCTTAAATTAAGACCTTTTTGTTGCAAAAATTGCTATGCGTGTTACTCATTAGAAAGAAGTTTACGTGATCATTTGAAACATGATTGTGGAATAGTTCATGTTTGTCATAAATGTGGAGAAACTTTTCTTAAACGCAGCATGCTAAGAGAGGAGGACTACCTGCTGAGGGCAGCAATGGAATTGAGAAAATTTCAATGCATCTATTGTGGAAAACCATTCAATAATGAACAAGGACTTACTCACCATCAGAAAAAATTCTGCTATTTGGCTCCTGGATCAAGATCCCATCATAGCCTTAAATTAAGACCATTTTCTTGCAAAAATTGCTATGCGTGTTACTCAACGAAAGGAGAGGAGGACTACATGCTGAGGGCAGCAATGGAATTGAGAAAATATCCATGTGTCTATTGTGGAAAACCATTCAATACCGAACAAGGACTTACTCTGCATCAAAAAATATACTGCTATTTGGCTCCTGGATCAAAATCCCATCATAGCCTTAAATTAAGACCTTTTTCTTGCAAAAATTGCTATGCATGTTACTCAACGAAAGGAGATGAGAACTACAAGCAGTGGGCAAAAGTAGAGTTGAGAAAATTTGAATGCGCCTATTGTGGAAAACCATTCAATTATGAACAAGGACTTACTCGGCATCAGAAAATAAGTTGCTATTTGACTCCTGGATCAAAATCGCATCATAAATACCAATCAACTCACGTTGATGCTATAAGAAAATTCCCCTGCGAGTTCTGTGGAAAAATCTTCATGACTCTGCACTACGTTAGCAAACATCAAAGGTTGACATGCTATGGAAATCCTCAGTCGAAAGGAGAAATGAGATATATTTACAAAGGAAAACTCCATGATACAGGAAAAATAGAGGAACAAGAAAGAGCATATATTTGTCAACACTGCGGAAAAAATTTTACCCAGTCGGGATTCCTGGCGAAACATCAGAAGACATATTGCTACTGGAATCCTGAGTCTGTCAGTTATGCCCAACACAGGCCTTTTGCTTATCCAATTGCAGCTTTGACTGGCAGAGCTCATCCCGAAATTGAATTTATTGATCCTATCAACATTGACATGCTTTCCCTGCTAACTAAAAATAGTAGTGGAAAAGACAAACGTGCTATCGGAAATGCTTCTGGCTCACCAGAATTCCAGAATTACGTCAGACAAGAAATAGCTAAAATGTCTGTCCAATTAGATGAAGTTCTGGCCCATCAGAGACTTCTTTCTTCCCAATTGGAGAAATCTGGTGTCATTCATTCAGAAACGTTAGATGCTTTCATGGAGGAAAATGCCCTTCATCTTCCTTTCAGAACTCTTGCTGAGTTTGAGCAATTTGATATGATTCTAACAGCAAATCCAAATGTCAGAGAGAAATTCATGTCATCCTTGGCTGACCTCTTTGATGGAAATTACATAGCATCAAGGAGTTTGCTGAATATTATCAAGAAATACATGTCGAGGGATGTAGCACTATCCTTTACTGCTATGAAACCGATTAAGGACAAACTTGTACTAAAAGGAACGACCTTCTGCAAGTGTATTATAAGTATTCTCCTGAAGAATCACTTTGATAAAATAAGTGGAGGAAAGGTGACAGAAGCCAAACTATTTTCTGCATTGGGGATTATTCTCACAAACGCAAAAGATTGGGAAGGTCATCGATCCCGAAGGTCCAAAGCTGCTGCCCAAGTTGCAATGAAGGATTATGAGGACTATTAA
Protein Sequence: MLRAAMELRKFQCIYCGKPFNNEQGLTRHQKISCYLTPGSKSHHSLKLRLFSCKNCYACYSSESTLQEDYLLRVAMELRKFQCIYCGKPFNNEYGLTQHQKRYCYLAPGSKSHHKEDCMLRAAMELRKYPCVYCGKPFNNEQGLTQHQKRFCYLAPGSKSHHSLKLRPFCCKNCYACYSLERSLRDHLKHDCGIVHVCHKCGETFLKRSMLREEDYLLRAAMELRKFQCIYCGKPFNNEQGLTHHQKKFCYLAPGSRSHHSLKLRPFSCKNCYACYSTKGEEDYMLRAAMELRKYPCVYCGKPFNTEQGLTLHQKIYCYLAPGSKSHHSLKLRPFSCKNCYACYSTKGDENYKQWAKVELRKFECAYCGKPFNYEQGLTRHQKISCYLTPGSKSHHKYQSTHVDAIRKFPCEFCGKIFMTLHYVSKHQRLTCYGNPQSKGEMRYIYKGKLHDTGKIEEQERAYICQHCGKNFTQSGFLAKHQKTYCYWNPESVSYAQHRPFAYPIAALTGRAHPEIEFIDPINIDMLSLLTKNSSGKDKRAIGNASGSPEFQNYVRQEIAKMSVQLDEVLAHQRLLSSQLEKSGVIHSETLDAFMEENALHLPFRTLAEFEQFDMILTANPNVREKFMSSLADLFDGNYIASRSLLNIIKKYMSRDVALSFTAMKPIKDKLVLKGTTFCKCIISILLKNHFDKISGGKVTEAKLFSALGIILTNAKDWEGHRSRRSKAAAQVAMKDYEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -