Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010000088.1:8453-29627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.45 61 5.1 0.1 2 14 14 26 13 29 0.84

2 16 5.5e-06 0.00074 20.6 0.9 1 20 97 116 97 117 0.96

3 16 0.0056 0.77 11.1 0.4 1 21 138 158 138 159 0.96

4 16 3.7e-05 0.0051 18.0 0.4 1 19 167 185 167 186 0.96

5 16 0.15 20 6.6 0.2 1 16 290 305 290 307 0.82

6 16 0.038 5.1 8.5 1.4 1 20 342 361 342 361 0.96

7 16 0.00014 0.02 16.1 2.8 1 20 408 427 408 429 0.96

8 16 0.0012 0.16 13.3 1.3 1 21 441 461 441 462 0.95

9 16 0.079 11 7.5 0.3 1 21 590 610 590 611 0.93

10 16 0.25 33 6.0 0.4 1 20 644 663 644 665 0.94

11 16 0.18 24 6.4 2.1 1 20 762 781 762 783 0.94

12 16 0.00041 0.056 14.7 1.8 1 23 791 814 791 814 0.97

13 16 0.42 57 5.2 0.2 1 21 862 882 862 883 0.93

14 16 0.0065 0.88 10.9 0.4 2 21 1011 1030 1010 1031 0.93

15 16 0.00087 0.12 13.7 0.1 1 21 1075 1095 1075 1096 0.96

16 16 4.5e-06 0.00062 20.8 2.3 1 23 1104 1127 1104 1127 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.45	61	5.1	0.1	2	14	14	26	13	29	0.84
2	16	5.5e-06	0.00074	20.6	0.9	1	20	97	116	97	117	0.96
3	16	0.0056	0.77	11.1	0.4	1	21	138	158	138	159	0.96
4	16	3.7e-05	0.0051	18.0	0.4	1	19	167	185	167	186	0.96
5	16	0.15	20	6.6	0.2	1	16	290	305	290	307	0.82
6	16	0.038	5.1	8.5	1.4	1	20	342	361	342	361	0.96
7	16	0.00014	0.02	16.1	2.8	1	20	408	427	408	429	0.96
8	16	0.0012	0.16	13.3	1.3	1	21	441	461	441	462	0.95
9	16	0.079	11	7.5	0.3	1	21	590	610	590	611	0.93
10	16	0.25	33	6.0	0.4	1	20	644	663	644	665	0.94
11	16	0.18	24	6.4	2.1	1	20	762	781	762	783	0.94
12	16	0.00041	0.056	14.7	1.8	1	23	791	814	791	814	0.97
13	16	0.42	57	5.2	0.2	1	21	862	882	862	883	0.93
14	16	0.0065	0.88	10.9	0.4	2	21	1011	1030	1010	1031	0.93
15	16	0.00087	0.12	13.7	0.1	1	21	1075	1095	1075	1096	0.96
16	16	4.5e-06	0.00062	20.8	2.3	1	23	1104	1127	1104	1127	0.98

Sequence Information

Coding Sequence: ATGATCAAATACCAGTGTACCACTGATAACGGTCGCTTAAGCTGTCCAGGTTGTGGTCGACTCTTCAAACATGAATTTTCAATGGAACTAAGCGAACTTCCACGTCAAGATTTCGAAGTTTTCGGAAGCAGTTTCCTTGCCATAAATGTGAACGAACTTACACAAGAATGGACACCTTGCGTCGTCATTTGCGTTATGAATGCGGCATTTTTCCACAGAGTTTTCCCATGGGATCACATTTCGCTTCTATTCACTCAACAGCTAAATCTTGCCGGAGCTATAAAGCGATTCCCTTGCCATAAATGTGGAAGATCCTACAAATCTAAGGGCAGTCTGACAAGGCACTTGGCTGATGAGTGCGGCCTCCAATCAACCAATAGGAACTATATGAGAAATACGGTTAGCAAGCCTTATCCTTGTTCCAAGTGTGCCAGATCATATTTGAACAGGAGTACTTTGAATCGACATCTCCGAGAAGAATGTGGAAAGTTACCGGCATATGCTTGTGGAGTTTGTCAAAAAGCTTTCAAGCAACGTTCAAATTTTCAACGACATGCACCATGGAAAAGCTGTGGATTTGCTCGCAATGTGGAAAACGCTACTTATGGCGAGGGTCTCTTCAAAATCATATTCGAGTGGAATGTTTCCGTGAACCAAAATTTTCCTGTCCAATCTGTGGAAGAAAATTCAAGCACAAACATAGATGGCAGTCACATGCTAAGACTTTTGGCAGGTATATTATCACAAGAGGTAAGGGATTCTTCAGGAGAAGCAGAATTATCCTGGAACAACTCGGATGGAATTCAATTACATTCTCACTACAACGTATCACTTCAAAATTCATTTCTTTCAAGTGTTGAAAAAAAATACGTCTGTAGTCAATGTGGAAAAGCTTATAAAGCAACCACTTCATTAAGATATTTTGGCGAGAACTGGAACGAGCTCAACAAAATGGAACAATTTCCAGAAGATGGTCATGGTCCAACAACTGAAGAAAATGAAGAAACTTCACGTCAAGGCAGTTTTGTTTGTCATTTTTGCGGCAGAGAATATAAATGGTTAAAGAGCTTAACGCGACATCAGTGGAAATGTGGAAATCAAGGATCCAGAAAATATTTGTATTTCCATGAATATCATATGTTTCCTGACTGGAGCTGCAATCCTGAAACGCTGGAGCCTCTGAGAGAGTTCCAACCCAGTGATTATGTTCAAGAACGACGATTTAAATGCAATCGTTGTGGAAAAGCTTACAGTTCTCTAAAAAGCTTGAGACGTCATCGTTTCCACTGTGGAAATGATGAAAGTGATGATCGAGCTGAGTTTGAATGCACTTACTGCAACAAGGCCTACAGATGGAAGAAAGGCCTGAAACGTCATCAGCAACGCTGCGAAGCAAAAATGGCACAAGAAAATTCAGATCAGAGTAATTTAGAGGCAAATCAGACAAATGAATCTCAAGATAATCAGGCAGAAGAGTCTCGAGATAATTTTGTAGAAGAATCTCGAAATAATTTGGCAGAAACACTTGGAAATAATGTGGCAGAAGAAACTGAAGATAATTTGCCAGAAGAAACTGAAGATAATTTAGAAGAAGAGGCTGAAGAAGTTGAAGAAGATTTATTTGAAGATAATAAACCTATTCAAGTGCCTCGAAATCTACGACGAGATTCTCAACAGTCGGAAGAAAATTCGATTGTTGATAAGAGAGTCAGTGAAGGATCTTTAAAATCTGCAATAATGCGAAACAGAAATGCAACTTCAGGTCGCTTTCAGTGTATTTTATGTGGCAAAAGGTACGGTTGGTTGAAAAATTTGAGGCGTCATCAGAGGATTTGTCGTAAAAAAGTAGGCAAGCAACGCTGGAAGGAATGTAAAGTGATGATTGAGCCTCTTCAATTGAGGAGTTCTAAGAGGATTTCAGAGCAAAATTTCAAGTGCCAGAGTTGTGTTAAAGAGTTTAGATGGTTGAGAGATTTGAGGCAACATCAAGCAAGTTGTGGTAATTCGTCTCAGAATATATGGAATGTTAGTGAAGCTTCTGCAAAACCAGATAAAAATCCATCGATTTCAAAAAATAATCAGGCATCTTCTACTCCTGAAGGTTACAAGAATGAAGGTCCTGGTCTTTACAAATGTGCATTTTGTGCTAAAGAGTACAAATGGCGAAGAAGTTGGGATGAAGGCGAGTGGAATGAAAACATGATCAAATTTGAATCACCGCCAGTAGACGAATCTGGATTTGAACAAAGTGTGGAAGAAATTGACAACGAAGCCCAAGGCACCTTTAGATGTTCCCGCTGCGGAAGATTTTATAAATGGATGAAGGATTTAAAACGTCATCGACATGGCTGTGGTGATCAAAAACCAAAATTTCCTTGCCGAATCTGTAAAAACGTATTTTCTCGTGGAGATACTCTCACACGTCACTATAAACGCAAACACAATAAAATTCCTCTCACTCAAATTCGCGAAAAGAAACGCAGATGGACAGAAGATTCATGGAGACACCTCAGGATAAAGGACGAAGTTCCTTGGGCTGGATTCGTTTTGGGAACTGAGGAAATTGACAAAGAACAAGTTAGTTACGAATGTTCACGATGTGGAAATAAATATAAGTGGATAAAGGGCTTACAACGCCATCAAATGGTGAGGGTACTCCTTTCAAGATTACCTTCGAATCGACCTTATCTCATTGCAGTTGGTGAGGACAAAAGCATCATAAGCTTCTACTTGATAGCATTGAAAGGAGAATTTCTGTCAACAAATACCACCGAGTTCATCAGAGCATTTGACCTCTTATTTAAGTCTAACTTCGTATTTCGAATTAAGTTCGGCAACAACATTTCGAATTTCTATGAGGCAGTGAATGTTGAGTGGAACGAGCAATCGAACGAGATGGAGTTCATAATTCCAAATGAATTGAGTCATGATGTGGGTATGAATCCCCCCTGTCTTGTGGAAGGACACAAAGTATGGATTACTAGCTTTGGAAATGAAGTTGCTGTAAAGAAGAAAAAGAAAAACCCTCTTCAATGCGAAATCTGCAATCGAATTTTTTCATGGGCACGTACTTTGAAAAGACATCAACTTCACTGTGGAAATGATAAAGAAGGACCACTAAAGTATTCACTTACTCTAGATGAAGTTACTGGCTTTGAATGGAATCCACAGGAAATTTTGTCTCGAACTCGGGGACAAGTCACTCCACAAGATCAACAACAATACATGTGTGGAGAGTGTGGCAAAGGTTATAAATGGATGGACAATTTAAGAAGACATCAAAGACTAGAATGCAACAAAAAACCAAAATATTCATGTGTTATGTGTGACAAAACGTTTTATAGACGTTACGAATTGAAAAATCACGTAAATACTAAACATTTTAGATCTTGA
Protein Sequence: MIKYQCTTDNGRLSCPGCGRLFKHEFSMELSELPRQDFEVFGSSFLAINVNELTQEWTPCVVICVMNAAFFHRVFPWDHISLLFTQQLNLAGAIKRFPCHKCGRSYKSKGSLTRHLADECGLQSTNRNYMRNTVSKPYPCSKCARSYLNRSTLNRHLREECGKLPAYACGVCQKAFKQRSNFQRHAPWKSCGFARNVENATYGEGLFKIIFEWNVSVNQNFPVQSVEENSSTNIDGSHMLRLLAGILSQEVRDSSGEAELSWNNSDGIQLHSHYNVSLQNSFLSSVEKKYVCSQCGKAYKATTSLRYFGENWNELNKMEQFPEDGHGPTTEENEETSRQGSFVCHFCGREYKWLKSLTRHQWKCGNQGSRKYLYFHEYHMFPDWSCNPETLEPLREFQPSDYVQERRFKCNRCGKAYSSLKSLRRHRFHCGNDESDDRAEFECTYCNKAYRWKKGLKRHQQRCEAKMAQENSDQSNLEANQTNESQDNQAEESRDNFVEESRNNLAETLGNNVAEETEDNLPEETEDNLEEEAEEVEEDLFEDNKPIQVPRNLRRDSQQSEENSIVDKRVSEGSLKSAIMRNRNATSGRFQCILCGKRYGWLKNLRRHQRICRKKVGKQRWKECKVMIEPLQLRSSKRISEQNFKCQSCVKEFRWLRDLRQHQASCGNSSQNIWNVSEASAKPDKNPSISKNNQASSTPEGYKNEGPGLYKCAFCAKEYKWRRSWDEGEWNENMIKFESPPVDESGFEQSVEEIDNEAQGTFRCSRCGRFYKWMKDLKRHRHGCGDQKPKFPCRICKNVFSRGDTLTRHYKRKHNKIPLTQIREKKRRWTEDSWRHLRIKDEVPWAGFVLGTEEIDKEQVSYECSRCGNKYKWIKGLQRHQMVRVLLSRLPSNRPYLIAVGEDKSIISFYLIALKGEFLSTNTTEFIRAFDLLFKSNFVFRIKFGNNISNFYEAVNVEWNEQSNEMEFIIPNELSHDVGMNPPCLVEGHKVWITSFGNEVAVKKKKKNPLQCEICNRIFSWARTLKRHQLHCGNDKEGPLKYSLTLDEVTGFEWNPQEILSRTRGQVTPQDQQQYMCGECGKGYKWMDNLRRHQRLECNKKPKYSCVMCDKTFYRRYELKNHVNTKHFRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -