Sito024237.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000036.1:2950928-2953347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.45 62 5.1 0.3 1 23 328 351 328 351 0.91 2 10 0.28 38 5.8 3.9 2 23 359 380 358 380 0.91 3 10 0.0001 0.014 16.6 3.5 1 20 386 405 386 408 0.97 4 10 0.00018 0.025 15.8 2.1 1 23 414 436 414 436 0.98 5 10 2.8e-05 0.0038 18.4 3.6 1 23 442 464 442 464 0.97 6 10 5.1e-05 0.007 17.5 0.5 1 23 475 497 475 497 0.98 7 10 4.6e-06 0.00063 20.8 0.4 1 23 503 526 503 526 0.97 8 10 2e-06 0.00027 22.0 0.6 1 23 532 554 532 554 0.95 9 10 5.6e-05 0.0076 17.4 0.1 1 20 560 579 560 582 0.94 10 10 2.5e-05 0.0034 18.5 0.3 3 23 590 610 588 610 0.98
Sequence Information
- Coding Sequence
- ATGAATTGGGAAGTGAGCACAGCACCAATGTGTCGAGCTTGTATGGAAATTGATGGAACTTTTATTCCTATGGATGATGGTTCCTGCAGCAAGGAAAGTTTACTTCGCAAACTTGTTGATTTAACGTCAATTCAGATAAACGAAAACGATGGCTTGCCAACCATGCTTTGCACAAAATGTGTTTATCGCACAAATACTTTTTACAATTTTAAAATGCAAGTTAAAGAAACTGAAAGGAAACTTAAAATAATGTTCGAGATTTCATCCGATTCCTTAAAGGAAGAGATTTTCGACAATGATTTTGTTGATAACGTAGGTACAGAATCTTCAGAGACTCTTGAACAGGAAAGTGACAACTGTACGGAGAAAAATATCCCAAAGGAACAAACAAATATTGAAACAATTCAAATATTGAAAGTTCCAAATGACATAGATCCCACATTCCAGGATATTTGTTTTGGACCTCAAAATATCCAATTGCTGAAAGGTGAAAAAGACAATATTTTTAATTCTAAAAGCTTACAATACACAATAACATATGTTCCTGATGAGATAAATTCTGTTCTGAATAGAGATGCTATTCAAACAGTTCTTGACAATCCGGAAATCAGTTTAGAAAGCACTACTAAATATAATCGTTTAGGACCTCTAAAAGTAAATTCAGTAAAGAAATTAGCAAATAATTTGCAATCTGTAGAAGTTGTAAAAACTCTGGCAAATTCACATCTGGTGAAAGAAAATCTGATTGAAGAAGCCCTACAAAATACAAATTTGCAAATCATATCTAGTGGCGATCTCAGTCTCGGTATTGAGAACAATAGAAACAAAGAAATAAGCGACAACGCAAGAAGTGAGAACTCGCTCGTCAGTGAAGAGTCAGATTCGGAATATTTTATCCATGCAACAGACGATACAGTGGGAAGCCTCAACGATATGATAACGAGGATCAAGGAAATAAAAAAGGACGGAGACAGAGTAGAGTATCAATGCACCCTTTGCCTGCAAAACTACAGAGAACTCTCGAAAGTTTTGACACATATAGTGGAAAATCATGTACCCAGTACGGGTCCATTCTTTTGTATCGTATGTGAAAAGGATTGCGAAACTCATCGCGAATTGCGATCACATGTTAAGACCCACACTGGTCAATTCCCTTACACTTGTTTCATCTGTAATAAGGCTTACGCAACGAAAAGGTACCTGAAAAGGCACATGGTTTGCCACCCGGATTTTCCAAAACATCGGTGCCCGAAATGTGGCGTTCGTTATAAACTCAAATTTGAATTAGAAACCCATTTATCGACTCATGCTGGCGGGCCAGCTTACCAATGTAGTCAGTGTTCTCGAGCATTTAATCATAAAGGAAACTATAAACGGCATCTGGTGTCTCATATAGATCCGTTAAGTCTTCACCTTCCAAAATATCCTTGTGATATATGTGAAAAACGGTTTCTCAACAACCGAACCTTGACAGCTCATCGTAGAGTTCACACTGGAGAAAAACCTTTCAGGTGTCTTGCGTGTGATAAAAGTTTTTCGCAGCAAGGTAACCTCCTAAATCACGTCAAGTCAGTTCACTCAAATCCAAGGAGTTACACGTGCGAGGTTTGTGGGAAGAGTTTCAATCAGAAAGCTACTCTAAAGGATCACAGTCTTCTACACACGGGTGAGAAACCTTATGTGTGTACAATTTGTGGAATGGCATTCACGTTTAGCGCTGCAATGAGAAGACACATGTGGTCTCATAGTGGAGGAAAACCATTTGGATGTGATGTTTGCCAGGCGCGATTTATTGGCAAGTACGATTTGAAAAGGCATATGAGAATACACTCGGAGAGGCCAAAATTAAGCAAAAAAAGGAATTTAGCTAAACAGGATGATATGCTTCCTGAAGAACTTACGAAAGAAATGGTTCTAGAACATACGCAGGATGGAAGGACAATATTAATTGAGCAGATTGAACCTATTCTGCTTTCGGAAGATACAACGGAAATTGGGCATGGAAAAGAATCAGAGAAGGAAAATGTAGATGCTCTTTTCAATATTATTGAGTATGGTTGA
- Protein Sequence
- MNWEVSTAPMCRACMEIDGTFIPMDDGSCSKESLLRKLVDLTSIQINENDGLPTMLCTKCVYRTNTFYNFKMQVKETERKLKIMFEISSDSLKEEIFDNDFVDNVGTESSETLEQESDNCTEKNIPKEQTNIETIQILKVPNDIDPTFQDICFGPQNIQLLKGEKDNIFNSKSLQYTITYVPDEINSVLNRDAIQTVLDNPEISLESTTKYNRLGPLKVNSVKKLANNLQSVEVVKTLANSHLVKENLIEEALQNTNLQIISSGDLSLGIENNRNKEISDNARSENSLVSEESDSEYFIHATDDTVGSLNDMITRIKEIKKDGDRVEYQCTLCLQNYRELSKVLTHIVENHVPSTGPFFCIVCEKDCETHRELRSHVKTHTGQFPYTCFICNKAYATKRYLKRHMVCHPDFPKHRCPKCGVRYKLKFELETHLSTHAGGPAYQCSQCSRAFNHKGNYKRHLVSHIDPLSLHLPKYPCDICEKRFLNNRTLTAHRRVHTGEKPFRCLACDKSFSQQGNLLNHVKSVHSNPRSYTCEVCGKSFNQKATLKDHSLLHTGEKPYVCTICGMAFTFSAAMRRHMWSHSGGKPFGCDVCQARFIGKYDLKRHMRIHSERPKLSKKRNLAKQDDMLPEELTKEMVLEHTQDGRTILIEQIEPILLSEDTTEIGHGKESEKENVDALFNIIEYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394596;
- 90% Identity
- iTF_01392240; iTF_01390561; iTF_01394596; iTF_01393749;
- 80% Identity
- -