Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010000098.1:3071482-3073818[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 5.1 8.5 0.3 1 20 368 387 368 389 0.94

2 9 0.7 96 4.5 0.5 2 23 393 415 392 415 0.93

3 9 0.086 12 7.4 1.0 1 23 420 443 420 443 0.97

4 9 0.00013 0.017 16.3 0.1 3 23 451 472 450 472 0.95

5 9 5.8e-05 0.0078 17.4 0.2 3 23 482 503 481 503 0.96

6 9 1.6e-05 0.0021 19.2 0.5 1 23 508 530 508 530 0.98

7 9 6.5e-07 8.9e-05 23.5 0.2 2 23 537 558 536 558 0.97

8 9 2.6e-07 3.6e-05 24.7 0.8 1 23 564 586 564 586 0.99

9 9 2e-07 2.8e-05 25.1 0.2 1 23 592 614 592 614 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	5.1	8.5	0.3	1	20	368	387	368	389	0.94
2	9	0.7	96	4.5	0.5	2	23	393	415	392	415	0.93
3	9	0.086	12	7.4	1.0	1	23	420	443	420	443	0.97
4	9	0.00013	0.017	16.3	0.1	3	23	451	472	450	472	0.95
5	9	5.8e-05	0.0078	17.4	0.2	3	23	482	503	481	503	0.96
6	9	1.6e-05	0.0021	19.2	0.5	1	23	508	530	508	530	0.98
7	9	6.5e-07	8.9e-05	23.5	0.2	2	23	537	558	536	558	0.97
8	9	2.6e-07	3.6e-05	24.7	0.8	1	23	564	586	564	586	0.99
9	9	2e-07	2.8e-05	25.1	0.2	1	23	592	614	592	614	0.98

Sequence Information

Coding Sequence: ATGGTACAAGATCCCCTGGATTCTCCCTCTACTGTGAACAGTGAAGAAGTTAAGAAGAAACCAGCTCCTCCAATTCGAAGAAAAAAAAGGCGGGCCTATCGAAAAAGGTTCCATCGCAGAAAGGGCGATGGAAACAAGAGAAAAGAGACAAAGACCAAGACCAAGACTCAAAATAATTCTTCGGAAAGTTGTTTTACTTTTGTAAAGACTGAAAATAATCCCATGGAGAATGACTCTACGCCAAAAAATCTTTTACGTGTAAAATCACAAGCAGAATTAGAAGATCCAGTCATATCACAAAATCCCGTAATGGTGCCAAATCCCCACGTAAAAAAAAATTTAGTTCGTCTAGTAAAATCAAACTTTTCTAACAACACAGGCGAAAAGTTTATCTTGACTAAAAGTTCCACTGGGGTTCAATATTTAACTCCCATAAATCCTGAATTTCAACATCAATTAGCGAAGAAATTTTTTGTGATAAGGAAGTCACCTTCCACGAAACCAGCAACTTTGATAATGCAAACATCAAAGCAAGTTTTAAGCTTTAAGCCAAATTTTCAAGTTCTAAGGACACAACCAATGAAGCAACTAGTTCCGACAAAACTACAAACTGTAAAAACAGAACCAGCTTCAGTTGATACAACTTCAACGCGACCAACTTTTACGGAACAAACTTTAACAAACCCAACTTTAACGAAACCAATTTCAATAGAAACAATTTCAGTCAAAACAATTTCAACGCAACCACCTTTAACGAAACAAAGTTTAACAAACCCAACTTTAACGAAACCAACTTCAATAGAAAGAATTTCAGACGAAACAATTTTAACGCGACCAACTTTAACGAAACAAACTTTAACAAGCCCAACTTTAACGATACCACCTTTAACGATACCACCTTTAACGAAGACAATTTTAAAGCAACCAAATTCAATGCCATCAACTTCAACGCATCAGCAGCAAGTTCCAAAAGAAATGACGATTTCAGAAAAGCGAAAAATGTTGAAAATGCAAACAATTCCGTTAAAGCGGGAAGCTTCAGATTTTCCAGAAGTAATAAGCTCCGATGACTCTTTAAGCTCTGAACATGATCTGGACGATTACAAATGTGCCCATTGCCAAGTGGAATTTTTCTCGCTCGAAACTCTCGTCGAGCATTTGGATAAGATCAAACTTCAATGCGAGACTTGTAAAGAATACTTCCTCTCAGACAAACTTTTGAAAATGCACTTGAAGGAGGCGCATAAAATAAAGGGATACAAATGCTTGAATTGTAACTTCTTTGGTACCAGCATGTGGGATCTAAAACTTCATCAATCGAGAGATCATTGTAAGGAGTACATGAACCCGTGTGAAGAATGCGACAAGGTATTCTCAAATGCTGAAGTCTTGAGTAACCATGTCAAACAAGTACATGAAACTTCTTCAGCAGCGAATCTTCTTTGTGAATGGTGTGGTAAAGGGTATAAAAATTTTTATACACTACAGCGTCACATCGAAAGTATCCACCAGATGATTAAATATCCTTGCAAACAATGTGACAAGGTCCTCTTTTCCAAGTCCACATTAGCCCGGCATGTGAGGTGGCATAGTAATAAGGAAAAAATAGTTTGCGAGCTCTGCGGAAAGACATTCAATATTAAGTCTGACCTTCAGGTTCATATGAGGCAACACACTGGCGAGAAACCTTACCAATGCTCAATTTGCGGTAAAGCTTTTGCTAAAAGAACTACTTTGAGGCAGCATCTTTTAACGCACTCAGGAAGGAGACCTTACGTCTGTGATATTTGTGGAAGATCCTTCACTCAAAAGCCCGGACTTACTGCTCATAGAAAATCACATCCAGGTGATCTGCCACCCTTGCCGAGTCTTTTCATTGATGAAATTTTGAAAGATCTTCCGGAAGATGCTTTCCAGAACCAGGGAAAGAAACAGGACGGGGGCCAAACGACTCAAAATATTGGAGGATGTGAAAATGAAGGCAGATCGGTGGAGAAAGAGGCTGAGGCAGAAAAGGAAAAGGAAGATAATGTTGAGGAAGAAGGATCGAAGAAAAAGGAAAATAATGAGGAGAAAGGAACGAAGGAAAAGAAAGATAATGAGGAGAAAGAAACGAGGGAAAAGGAAGATAATAAGGAGAAAGGAACGAATGAAAAGGAAGATAACGAGGAGAAAGGAACGAAGGAAAATGAAGATAATGAGGAAAAAGGAACGAAGGAAAATGAAGATAATGAGGAGAAAGGAACGAAGGAAAATGAAGATAATGAGGAGAAAGGAACGAAGGAAAATGAAGATNNNNNNNNNNGAGGAAAAAGGAACGAAGGAAAAGAAAGATAA
Protein Sequence: MVQDPLDSPSTVNSEEVKKKPAPPIRRKKRRAYRKRFHRRKGDGNKRKETKTKTKTQNNSSESCFTFVKTENNPMENDSTPKNLLRVKSQAELEDPVISQNPVMVPNPHVKKNLVRLVKSNFSNNTGEKFILTKSSTGVQYLTPINPEFQHQLAKKFFVIRKSPSTKPATLIMQTSKQVLSFKPNFQVLRTQPMKQLVPTKLQTVKTEPASVDTTSTRPTFTEQTLTNPTLTKPISIETISVKTISTQPPLTKQSLTNPTLTKPTSIERISDETILTRPTLTKQTLTSPTLTIPPLTIPPLTKTILKQPNSMPSTSTHQQQVPKEMTISEKRKMLKMQTIPLKREASDFPEVISSDDSLSSEHDLDDYKCAHCQVEFFSLETLVEHLDKIKLQCETCKEYFLSDKLLKMHLKEAHKIKGYKCLNCNFFGTSMWDLKLHQSRDHCKEYMNPCEECDKVFSNAEVLSNHVKQVHETSSAANLLCEWCGKGYKNFYTLQRHIESIHQMIKYPCKQCDKVLFSKSTLARHVRWHSNKEKIVCELCGKTFNIKSDLQVHMRQHTGEKPYQCSICGKAFAKRTTLRQHLLTHSGRRPYVCDICGRSFTQKPGLTAHRKSHPGDLPPLPSLFIDEILKDLPEDAFQNQGKKQDGGQTTQNIGGCENEGRSVEKEAEAEKEKEDNVEEEGSKKKENNEEKGTKEKKDNEEKETREKEDNKEKGTNEKEDNEEKGTKENEDNEEKGTKENEDNEEKGTKENEDNEEKGTKENEDXXXXGKRNEGKER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392239;
90% Identity: -
80% Identity: -