Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010000098.1:2048226-2051087[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.6 82 4.7 0.1 1 20 343 362 343 365 0.82

2 12 3 4.1e+02 2.5 1.1 1 20 365 385 365 387 0.87

3 12 2.8e-06 0.00038 21.5 1.9 3 23 433 453 432 453 0.98

4 12 5.1e-05 0.0069 17.5 0.5 1 23 459 481 459 481 0.98

5 12 0.00041 0.055 14.7 2.4 1 23 487 509 487 509 0.98

6 12 5.7e-06 0.00078 20.5 1.0 1 23 515 537 515 537 0.98

7 12 0.0005 0.069 14.4 1.3 1 23 543 565 543 565 0.98

8 12 5.3e-07 7.2e-05 23.8 0.5 1 23 573 595 573 595 0.98

9 12 0.0048 0.65 11.3 0.2 1 23 601 623 601 623 0.94

10 12 3.2e-05 0.0044 18.2 2.3 1 23 629 651 629 651 0.98

11 12 3.7e-05 0.005 18.0 0.9 1 23 657 679 657 679 0.98

12 12 0.0024 0.32 12.3 5.9 1 23 685 707 685 708 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.6	82	4.7	0.1	1	20	343	362	343	365	0.82
2	12	3	4.1e+02	2.5	1.1	1	20	365	385	365	387	0.87
3	12	2.8e-06	0.00038	21.5	1.9	3	23	433	453	432	453	0.98
4	12	5.1e-05	0.0069	17.5	0.5	1	23	459	481	459	481	0.98
5	12	0.00041	0.055	14.7	2.4	1	23	487	509	487	509	0.98
6	12	5.7e-06	0.00078	20.5	1.0	1	23	515	537	515	537	0.98
7	12	0.0005	0.069	14.4	1.3	1	23	543	565	543	565	0.98
8	12	5.3e-07	7.2e-05	23.8	0.5	1	23	573	595	573	595	0.98
9	12	0.0048	0.65	11.3	0.2	1	23	601	623	601	623	0.94
10	12	3.2e-05	0.0044	18.2	2.3	1	23	629	651	629	651	0.98
11	12	3.7e-05	0.005	18.0	0.9	1	23	657	679	657	679	0.98
12	12	0.0024	0.32	12.3	5.9	1	23	685	707	685	708	0.95

Sequence Information

Coding Sequence: ATGTCTGTCATCGTCGAGGAGTTCAACTACCTGTGTCGCCTTTGCGCAACCAAGACGGAAATCCTGATGGGATTGCCGATTTTCGATGCTGGCGAGCAAAGGAGCATCGACAAAAAAATAGCCGCATGCTTGCCTGTCCAGGTATCTATAGGTGACCAGCTTCCGAAGGTAGTTTGCGGAGAATGTGCCTTCAAACTAGATCAACTATTCGACTTCCGCGAAAAATGTCTCCACACTGAGGAAATGTTTATGGAGATGCTGAAGCAAATCACAAAGCAAGAGGAAGTGCACATGGACCATCACCTTGACATGGGGACAATACAAAACAGAATAGAAACTATTCCATCAAATATAGAAGAAATGCAAAACCACGCAAATGGAAACCCGCACAACTCTGCAGAAACAATTCATACAATGCAGGTAATGGACGATATGGATCTAGCTGGAGGTGAACAAGTTGTAACACAAGAAGAAATTGGCCATCAGGACACCGACCTCGAAGTTACTGATATACATTGTTTAGATGGTGCAACCGTCAGAATGGTTGACGAGCATATCAGAGAAGTTTCCAATCATCAGATCACTATGCATTTGGAAGGAGATATGACTGTCGTTGGTAATTTGACTGTAGAGGGTCACTTGGATCAACTTGGAATTAATTACGTTACGTCTATCAGTCCCGAGACGAGTCGAGAGCAAATTGTACACTATTGCAATAGTGTTAAGTATGAGCATGTGACTGTAAAAGACGAATTCCAAAGGTTGCAGGAGAGATTGAGTGTTGAACCTACATCACATATGATTGAAAATAACGTCACTGCTGATAGTTATTCCCCGTTTCACGGGGCCAAAGAATCTTTTAACACTGAACCCGAATCATTGAATTCTCCTCACGGAAATGCACTTCCTTCAACCAGTCATGTAAACCCTGACAATTGTATGATGGTCGAGTATTCGAAAAGGACAAAAAAGACTCTTCTAGAATCAATTTTAGAAAATCCTACCATCAACAATGGACTGTCTTGGTTTGTTTGTCCATTCTGTAATGAAGCCACTTCGGAACCAAATGATTTGGTCCCGCACTTTGAACAACATTTTTGTAATTGTGTCTGTGGTCTTTATTTTACGAGTATGGAGGTATTAAGTCTCCACAAGCAAAACTGCGAGAAAAGCAAAAGCAATGTAAAGGAGAAAAAGGCTGTGCAAATTAAACTTGATACCTCTGCGAAATCTAATGAGAATCATGAAGATCAAAAGAAACAGCCGTCTGTTCGACAAAAGTGGACCCCGAAAATATGTACACAATGTGGTAAACAATACAGGACTAATTATAAATTACAGGAGCATATGCGAAAGCATACTGGAGAAAAACCTTTTAAGTGTTCAATGTGTGAGAAAGCTTTTAGGAGCAAAATTGGACTCGCACAACATTTTGCAACGCATACGGGACAATTCGATTATAATTGTTCTACGTGTGGGAAAGGATTTCAGTGCAAAAGTTATCTCATCGTGCATCAAAGGGTACACTCTGACCTAAAACCTTATCCATGTGAAACTTGTGGTCAGAATTTCAAAACTAAACAATCATTACTAGATCATCAAAACCGTCACTTGGGAGTAAAGCCTTATATGTGCGAAGTATGCGGTCGAGGATTTATCACGAAGGGTCTCTGCAAAAGTCATCAGAAGATCCATTCAGGGATGGATAATCGCCAGTACCCCTGCGTCGTCTGCAACAAGATGTTCGTCAGTAAAAGTTACCTAAATACCCACCTGCGAATTCACACCGGCGAAAAACCCTATCTTTGCGAAGTGTGTGGTAAAGGTTTCTTGACTAGGGTCGATCTTAAAATCCACTCCACTATGCACACTGGAGAAAAAAGTTTCAAATGTGACATGTGTGGCAAAGTTTTCGCTAGGCGAGCTGCTCTTCGATGTCACAAAAGATCACACACTGGCGAACGACCTTACAGGTGTGAGACGTGTGGAAAAACTTTTACTCAATTTAGTCCGATGGCCATTCATAAACGCTTACATACTGGAGAAAGACCTTATGTATGTGATACCTGCGGAAAGTCTTTCGTTTCCAGGTCGACAATGATGTGCCACAGAAAAAAACATCACGGTTCAACCAATGAACCAAAAGAAATTTTGCCTGATATTCCGGAAACGAGTTTCAGAGAACAGGACGAAATTCAAGCTTCGGGTGAATAA
Protein Sequence: MSVIVEEFNYLCRLCATKTEILMGLPIFDAGEQRSIDKKIAACLPVQVSIGDQLPKVVCGECAFKLDQLFDFREKCLHTEEMFMEMLKQITKQEEVHMDHHLDMGTIQNRIETIPSNIEEMQNHANGNPHNSAETIHTMQVMDDMDLAGGEQVVTQEEIGHQDTDLEVTDIHCLDGATVRMVDEHIREVSNHQITMHLEGDMTVVGNLTVEGHLDQLGINYVTSISPETSREQIVHYCNSVKYEHVTVKDEFQRLQERLSVEPTSHMIENNVTADSYSPFHGAKESFNTEPESLNSPHGNALPSTSHVNPDNCMMVEYSKRTKKTLLESILENPTINNGLSWFVCPFCNEATSEPNDLVPHFEQHFCNCVCGLYFTSMEVLSLHKQNCEKSKSNVKEKKAVQIKLDTSAKSNENHEDQKKQPSVRQKWTPKICTQCGKQYRTNYKLQEHMRKHTGEKPFKCSMCEKAFRSKIGLAQHFATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCETCGQNFKTKQSLLDHQNRHLGVKPYMCEVCGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHKRSHTGERPYRCETCGKTFTQFSPMAIHKRLHTGERPYVCDTCGKSFVSRSTMMCHRKKHHGSTNEPKEILPDIPETSFREQDEIQASGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676989;
90% Identity: iTF_01392979;
80% Identity: -