Sito009543.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000098.1:3064166-3066347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0013 0.18 13.1 4.3 1 23 17 40 17 40 0.92 2 16 0.00033 0.045 15.0 2.0 1 23 46 69 46 69 0.96 3 16 0.0019 0.26 12.6 0.4 3 23 76 97 75 97 0.94 4 16 0.00015 0.02 16.1 3.3 1 23 102 125 102 125 0.94 5 16 3.1e-05 0.0042 18.2 3.2 1 23 130 152 130 152 0.98 6 16 1.6e-08 2.2e-06 28.6 1.6 1 23 158 180 158 180 0.98 7 16 1.8e-05 0.0025 18.9 3.7 1 23 186 208 186 208 0.98 8 16 0.00041 0.056 14.7 0.2 1 21 274 294 274 295 0.95 9 16 1.2 1.6e+02 3.8 8.2 2 23 299 321 298 321 0.94 10 16 0.78 1.1e+02 4.4 0.4 1 23 326 349 326 349 0.82 11 16 1.6e-05 0.0022 19.1 1.3 1 23 355 378 355 378 0.98 12 16 0.17 23 6.5 6.0 2 23 384 406 383 407 0.93 13 16 0.00024 0.032 15.4 1.4 1 23 411 433 411 433 0.97 14 16 1.7e-06 0.00023 22.2 3.2 1 23 439 461 439 461 0.97 15 16 9.7e-05 0.013 16.7 1.2 1 23 467 489 467 489 0.98 16 16 3.7e-05 0.0051 18.0 1.6 1 23 495 517 495 517 0.98
Sequence Information
- Coding Sequence
- ATGTTACCAGAGGAAGAATTGGAGAAATTCAAATTAAGTTCTTATAAATACCCTTGCACACATTGCGATCTGGTTTACAAACACAGTCAAAGCTTATTACGGCACTTCGTCAAAAAACACACAGAGGGTGTAAAGTTCGCTTGTAATTTGTGCGATAAAAAATTTAAATTAAAAAATGACCTTTCCATGCACTCTCGCTCAAAGCATGATTATAAAAAGGTCGCATGTGAATTTTGTAATGAGACTTTTCGAAATGACTACACATTAGGACGACACATTGAATACAAACATAGTCCGAAAGAGTTCTTATGTGATATTTGCAAAAAGAAATTTTCAAGCAAGCACGGGCTTTCAAACCACAAGCAAATTAACCATAGAGTTAAGATCTACAATTGCGATATTTGCAAGAAGAAATTTGCTGCGAGACATTCTTTTAAAAGACACATGTTGATTCACAATGACGTTAAACCCTTCTCTTGTGGTATTTGTGAGAAAAGGTTCAAAAGAAAAAGTGATCTGATAAGACATCTACGGACTCACTCTAACACTAAACCCTTTACATGTGATAGTTGTAAGAATAATTTCAAAACTAAAGACAATCTCAGCCGACATCTAAGAAAACATGAGTGTGGCTTCAAAGATTCACGTGGAAAAAAGAGTGAAATACTCTACATCAAGATCGAACCTGGATCCATTCTGCTGCCTGTGAAACGAAAGATCAGTAAGCCTCTAGAGACTAATAACAACAATGCAAAAAATATCAACAATCCATCTAACAATGATAATGAAATAGACAAAATCATTCATGATCTCGAGAAATACATCTGTGATTTTTGCAATGTGAGTTTCAATTCGAAACGAGATCTCGCTCTACACATCAAGCAAAGTAAACTTTCATGTGAAATCTGCAGTCATCACTTTCAATACATGCATCAATTAAAACATCATTATGCTTCGAAGCATGGATCAGAGACGTTCCCGTGTTCGATGTGCAACTATGTAAGCAAATCTGTGGCTGCGTTACAATTTCATTTTATTAGGAAACACATGGATGGAAGTTATTATTACTGTGAACTCTGTTCGAAAGAATTCAAGCTTAAAAATGATCTCAATACTCATATGAATCGGGTTCACAGTGGAATTGCCTGTACTTGTGAGATATGTGGTCACCAAAGTGTCAGTCTTCACGCCCTGAAAAGCCACTTGAAATTTGTTCATCATAAACCTCCATACCAATGTAAACTTTGCCACCGTTCTATGACCACTCAAGAGAATCTTGATCAACATATAATCTGGCATCAAACGAGGGCACTTCATGAGTGTACGACTTGTGGAAAACAGTTTAAACAAAAGCAAACTTTGATTAAACACATGAGTATTCATACTGGAGAGAGACCATACGAATGTGTTGTTTGTAATAATACTTTTTCCAGACATTCTGCATATGAGCAACATGTGCTGACTCACATGAATAGAAAAATGTACTCGTGTACCGTTTGTGGAAAAGATTTTACCCAAAAGTCGGGACTTATTTTTCACAGAAAAAAACATACTGGGCCTCTTCCACCATTACCTGTTGTTTCTGTTCGGAAAGTAGTCGAGGAATTTATTAATAAATTTTTAAGTACGAGGTCGACGATTAGTTCAGAAAGTACAGCTGTTTAG
- Protein Sequence
- MLPEEELEKFKLSSYKYPCTHCDLVYKHSQSLLRHFVKKHTEGVKFACNLCDKKFKLKNDLSMHSRSKHDYKKVACEFCNETFRNDYTLGRHIEYKHSPKEFLCDICKKKFSSKHGLSNHKQINHRVKIYNCDICKKKFAARHSFKRHMLIHNDVKPFSCGICEKRFKRKSDLIRHLRTHSNTKPFTCDSCKNNFKTKDNLSRHLRKHECGFKDSRGKKSEILYIKIEPGSILLPVKRKISKPLETNNNNAKNINNPSNNDNEIDKIIHDLEKYICDFCNVSFNSKRDLALHIKQSKLSCEICSHHFQYMHQLKHHYASKHGSETFPCSMCNYVSKSVAALQFHFIRKHMDGSYYYCELCSKEFKLKNDLNTHMNRVHSGIACTCEICGHQSVSLHALKSHLKFVHHKPPYQCKLCHRSMTTQENLDQHIIWHQTRALHECTTCGKQFKQKQTLIKHMSIHTGERPYECVVCNNTFSRHSAYEQHVLTHMNRKMYSCTVCGKDFTQKSGLIFHRKKHTGPLPPLPVVSVRKVVEEFINKFLSTRSTISSESTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -