Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010023952.1:1001-7311[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.7 3.7e+02 2.7 0.1 3 11 63 71 61 77 0.81

2 13 0.00031 0.042 15.1 0.3 1 23 252 274 252 274 0.95

3 13 9.9e-05 0.013 16.6 1.8 1 23 282 304 282 304 0.98

4 13 1.2e-05 0.0016 19.5 0.2 2 23 312 333 311 333 0.97

5 13 0.00067 0.091 14.0 0.9 5 23 342 360 340 360 0.97

6 13 0.0001 0.014 16.6 4.1 1 23 367 389 367 389 0.98

7 13 6.4e-06 0.00087 20.4 0.1 1 23 395 417 395 417 0.96

8 13 1.1e-05 0.0015 19.7 0.4 1 23 423 445 423 445 0.98

9 13 2.2e-07 2.9e-05 25.0 1.6 1 23 451 474 451 474 0.96

10 13 3.6e-06 0.00049 21.2 0.4 1 23 480 503 480 503 0.96

11 13 4.7e-06 0.00064 20.8 2.8 1 23 509 531 509 531 0.99

12 13 9.5e-05 0.013 16.7 0.4 1 23 537 559 537 559 0.94

13 13 0.00011 0.016 16.4 0.1 1 23 565 589 565 589 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.7	3.7e+02	2.7	0.1	3	11	63	71	61	77	0.81
2	13	0.00031	0.042	15.1	0.3	1	23	252	274	252	274	0.95
3	13	9.9e-05	0.013	16.6	1.8	1	23	282	304	282	304	0.98
4	13	1.2e-05	0.0016	19.5	0.2	2	23	312	333	311	333	0.97
5	13	0.00067	0.091	14.0	0.9	5	23	342	360	340	360	0.97
6	13	0.0001	0.014	16.6	4.1	1	23	367	389	367	389	0.98
7	13	6.4e-06	0.00087	20.4	0.1	1	23	395	417	395	417	0.96
8	13	1.1e-05	0.0015	19.7	0.4	1	23	423	445	423	445	0.98
9	13	2.2e-07	2.9e-05	25.0	1.6	1	23	451	474	451	474	0.96
10	13	3.6e-06	0.00049	21.2	0.4	1	23	480	503	480	503	0.96
11	13	4.7e-06	0.00064	20.8	2.8	1	23	509	531	509	531	0.99
12	13	9.5e-05	0.013	16.7	0.4	1	23	537	559	537	559	0.94
13	13	0.00011	0.016	16.4	0.1	1	23	565	589	565	589	0.93

Sequence Information

Coding Sequence: ATGACATCTGACTCTGAAAAATATCACTCTAGCTGTTTGATATGTAACAGTAAACTATCAACTAGAAACACTGTAGCAATTTTTAGTGAACAATTAGGATCTCGACTTGAAAAGCCTCTTTCAGAAATAATTTTTTCTGTATTGGAAATTGACAGGGACAGTAACAATGCACACTCTAATGTTATTTGCAGAAAGTGCAAAAAAATGTTCGACGAGGTGGACGCATTAGAATGTCGTATGTCTGAAATAAAAAATGACATCTTTAACTGTTATAAGCAGACCATAAAAAAAATACGTTCAAATGACGAAGAGTATAATGACCATGATTATTTGGACACATCTGAAACACCCATCCAAGAAGTAGCAAGTGTTAAATCAAATCCCGTTTTTAGACAACGAAGTGAAGCTACAAAATCAGTTGAAAGCAAAAATAAACATGAAATTAGAGAGGATGAAAATGATATTGAAGACAATGAAACTTCTGACAACGACGATGTTTCTGATCTCGTAGAATCGATTAAAGAAGATAAAGAAGTGATTATTAAAGTTGAAGCATTGGACGATATAAACGAAGAAACAAAAGGACTTTACTTTAAAAAGTCGAAAACTAATACTAAAGAGGAAAATGTACAAGATCAGGTTGTATCTCAAGAAGGCTCACTATACACGTGTTTATTATGTTCCCGTAATTGTGAAAAAGGAGATGCAAAATTCATTATAGCACACTTAAGAACAAAACACAATGTTCGGTTGTATATATGTGATTTATGTGGGCTGAAATTCAGGAAAAGAACTGATCTTTCCGTTCATCTTGATGATCACGTTGCAAAAGAGGAAGGAGACTTTCAGTGTGAGAATTGCAACAGAATATTCAATAATTTGCGACTTTTTAGAATTCATAAGCGCATTCATTATCCGCAAACTAAATCCTGGCCATGTGAAGTCTGCGGCAAACGTTACAGTTCTAGAAATTTGCTGGAGGAACATACAAATACCCATACTGGAAATCGGCCTTACATGTGTAAGTGTGGAAAAGATTTTGCCTCAAAGTATACATATAAGGCGCACGTCAAAACGCACGAATTCCGACCACGACCTTTTGAATGCTCGCATTGTAATAAAACGTTCTTGAGTCAGCAAAATCTTAGTCAACATGAAAGAACTCATAATGGTATTAAGGAATACGTATGCGATCAGTGTGGTAAAGCTTTTGGGTCACCACATAATCTGGAAGTTCATAGCATAGTCCATACTGGTCACAAACCCTATAGTTGCAGGACTTGTGGCAAAGCATTCGCGAGAAAAGCTGAGATTAGAGATCATGAAAGAACTCATACGGGTGAAAAACCATACCAATGTGAACATTGTGGCGCCGTTTTCAGTCAAAGGTCGAATCTGCAGTCTCACAAACGTGCAACTCACTACAATGACAAAAGATACAAATGCGATATCTGCGGAAAGGGATTTAAGCGACGTAGACTTTTAGATTATCATATAAAAGCAGCTCATACTGGAGAACGTCCATATAAGTGCGAGACTTGTACGGCAACGTTTGTTTATCCTGAACACTTCAAGAAACACATGCGCATTCATACAGGAGAAAAGCCATTCTTGTGTGAAGTGTGCGGCAAAGCATTTAACAGCCGAGATAATAGGAATGCTCATCGCTTTATACACAGTGACAAAAAACCATACGAGTGCTTGGTTTGTGGCACGGGCTTCATGAGGAAACCTCTTTTGTATGCTCATATGCGATCACAGGGCCATCTGAACGACACGATTGTTGTGAACCAACCAAGATTAACAACAGAAGATGATCAAATTATCACTGTCTCAGAAGGCAATGTGGAGCTATTGATGGAAAACGCTGAAGTTGAACAGTTGGATGAAACGGAATTATACGTAGCAGGTATAAAAAATCACGTTATCATACATCAAGACGGTAATCAGATATACCATGAAGGAAATGTTTTGAGTATTCCTGCCGATGGACAAATATCTAGTAACCAAGTTCAACATCTAGTTGTTGATGGACAGCTTCTAGAAAATGATGACGATGAATCTAAAGAAGAGATGGAAGATGACGAAGAATTGTACAGTTACGAAGATGATGAACACGGTGAAACTCTAGTACTACCGGGAACTTCTGAATACAAGGAAATCATGGGAGATTCTAAAAATGCAGATAATAAGAAAAATGTCTGA
Protein Sequence: MTSDSEKYHSSCLICNSKLSTRNTVAIFSEQLGSRLEKPLSEIIFSVLEIDRDSNNAHSNVICRKCKKMFDEVDALECRMSEIKNDIFNCYKQTIKKIRSNDEEYNDHDYLDTSETPIQEVASVKSNPVFRQRSEATKSVESKNKHEIREDENDIEDNETSDNDDVSDLVESIKEDKEVIIKVEALDDINEETKGLYFKKSKTNTKEENVQDQVVSQEGSLYTCLLCSRNCEKGDAKFIIAHLRTKHNVRLYICDLCGLKFRKRTDLSVHLDDHVAKEEGDFQCENCNRIFNNLRLFRIHKRIHYPQTKSWPCEVCGKRYSSRNLLEEHTNTHTGNRPYMCKCGKDFASKYTYKAHVKTHEFRPRPFECSHCNKTFLSQQNLSQHERTHNGIKEYVCDQCGKAFGSPHNLEVHSIVHTGHKPYSCRTCGKAFARKAEIRDHERTHTGEKPYQCEHCGAVFSQRSNLQSHKRATHYNDKRYKCDICGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYAHMRSQGHLNDTIVVNQPRLTTEDDQIITVSEGNVELLMENAEVEQLDETELYVAGIKNHVIIHQDGNQIYHEGNVLSIPADGQISSNQVQHLVVDGQLLENDDDESKEEMEDDEELYSYEDDEHGETLVLPGTSEYKEIMGDSKNADNKKNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392960;
90% Identity: iTF_01392960;
80% Identity: -