Sito009532.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000098.1:3031233-3034563[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.8 9.3e+02 1.4 5.6 1 21 151 171 151 172 0.94 2 19 0.00042 0.057 14.7 1.0 1 23 180 202 180 202 0.98 3 19 3.3e-05 0.0045 18.1 1.4 1 23 217 239 217 239 0.97 4 19 0.0056 0.76 11.1 0.3 2 21 254 273 253 274 0.94 5 19 1.3e-05 0.0018 19.4 0.8 2 23 283 304 282 304 0.97 6 19 0.45 62 5.1 0.9 2 23 309 330 308 330 0.84 7 19 3.6e-06 0.00049 21.2 0.9 2 23 337 358 336 358 0.96 8 19 0.00027 0.036 15.3 1.1 1 23 367 390 367 390 0.97 9 19 0.7 95 4.5 5.2 1 23 401 423 401 423 0.98 10 19 0.014 1.9 9.9 2.5 1 23 520 542 520 542 0.98 11 19 0.0003 0.041 15.1 0.7 2 23 552 574 552 574 0.94 12 19 7.6e-05 0.01 17.0 6.3 1 23 580 602 580 602 0.97 13 19 0.089 12 7.3 0.2 1 23 606 628 606 628 0.97 14 19 4.4e-05 0.0061 17.7 3.0 2 23 635 656 634 656 0.97 15 19 5.5e-05 0.0075 17.4 0.1 1 23 662 684 662 684 0.98 16 19 0.26 35 5.9 0.8 1 23 690 712 690 712 0.96 17 19 2.1e-05 0.0029 18.8 0.2 2 23 719 740 718 740 0.96 18 19 7.7e-07 0.00011 23.3 0.6 1 23 746 768 746 768 0.98 19 19 1e-06 0.00014 22.9 2.3 1 23 774 796 774 796 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAGGAACGAAGCGGAAGAGAGGACGTCCCGTTGGAAAAAAGAACAAAAGCAGCGCAAGAGAGAAATTTAAAAAAAAGCCTTCTAAAGTCGAGAGTAAAGTACATAATACTAAAGAATCAAAAATACTTGTAGACGCAGTCAAAGAAAGTCCAGAAATTAAAAAGCAACCTGAGGAGACACCAACCCTAAAACGAAAGAGAGGACGTCCTCCCAAAAATTCCAAAATTACAAGTGACTGTATTGTCAAAAGTACGAGAGGTCGACCACATAAATCTTCACCAGACCACAAAGAGAAATTAAATCCTATAGCGAAAGTTTCAGAGAATGTTAAACCTCTGAAAAAATTTGAGGAAGATGATTCGACTTCGGAGGATGCTGCATCCGATGACAGTGATTTTCTACCTCCCCTTCCTGCCCAGAAATCTGCTAAACAAAAGAACCAATATCGCTGTCGGTTTTGTAATTTCAGAACTTGCTATAAAAACTCTTACCTATATCATATGGAACGATATAATGAGACTCCTGGCAAGTTTGAATGTGAATTGTGCGATGAGAGTTTCCCTTTGAAAAGAGAATTACACAGTCATTGGAAAAACCACATGCCAACCTATTTTCCTGATGGCCCAGATAATCCAGGATTCTATAAATGTGATATATGTGATGAAAGATTTTCAAAGAGATTTCAGCTTGGCAAACACAGACAAGCACATCGACTAAATTTTGTTCCAGAACGGGAACCGAGGAAAATGAAACGTTGTAGAATATGCGCTAAAAGATTTTATTCAGAAGTTGCTTTGTTCAAGCATATGGAACAAGACACTGATGAGCATCAACCTGTGGAATGTGATCTTTGCAAAAAAATGTTCAGGTCGAAGCGAAGCCTCGTAATGCATCTCCGAATTCACATCGGCCCCCTTATTTGTCACATTTGCGGATCGAGAAAGTACTCGGATGCTTCTATGAAGGTTCATATTCGACGACATAATAAGGAGTACTATATTCATTGTGACGTTTGCGACAAAGGGTTCTACAACAAAAGCGAACTGAGACTTCATATGATCAGCCATACCAATCGGGAAACCAATCGTCCATTTGTCTGCCAAATTTGTGGACGTTCTTATCGCTCTGGTTGTTATCTCAAGTTACACGTGAAAATCGCACATGTCGAGGCTGAGGAATATAAACGCAAGCGGTACAAGTGCGATATCTGCGATTTCGAAACTCACCTGCTAAAGTGTTTAAAAATACATAAGCAAACGCACACTGGAGAGAATTTGATATCTTGCCAATTTTGTAACAAGATGATTAATAGGAGGTCTGTCGAGGTGGCAGTGGATCCATCAGGAAACGATCTCAAGTTGGAGACGTATGAAATTGAGGAGGAAACAATTGAGGTGCCCCACGAGCAGATTATAGAATACACACCCGACGAAACTGGAGAGATCCAAACAGAAATCAAAATGAACACGCTTTTAAATCATAATAACATTGAGGAACTGTTGGAATCAAGTTCAACTGAGGCAGATGATCAGGCTAAGATTAGTAAAATATATGAGTGTGATTTCTGCGGAAGAAAAATGAAGAAGAAGGCTTTGTTCATGAAACACAAGCTGCGTCATGAGAGGAAACTTTCTAGAGAAAGTGCACGCTGTGATAAATGCGAAAAGGATTTCAGTGACGAGGAGAAATTGCGGAAGCATGAGATCAAAGCTCATCAAGATGAAAAACCCCATCAGTGTAGTCTTTGTGGAAAGTGTTTCAAAACCGAAGAGTTTTTGAGAACACATTTGAAACAACATAACAAGCGATTTGTTTGTGATGTTTGCGGAATCTCGAAGGTTTCAGGATACGATCTTAGGCTTCATAAAAAGAAACACAATCAGGAATTTGTTACACACTGTAATATCTGTAAAAAAGGCTTTTACACTAATCAAACTTTGGAACGGCATCTATTAACGCACACGGGTGAAAAACCATTTCCTTGTAGGATTTGTAATACTGCTTATGCCAGTGCAGCATATTTAAACATGCACATGAAATCTCATGGAGAGCGACAAAAACACAAGTGCAATCTTTGCGAGTTTGAAAGCTACTGGAAAGCAGCATTGAAGGTCCACCTTAGAATTCACACTGGCGAAAATCAAATTTCATGTGATATTTGTGGGAAATCGGTTTCTAGCAAAACTTATCTTCAGATTCATAATCGAATACATTCGGGAGAAAAACCACATGTTTGCGAAGTTTGCGGCAAGGCTTTTAGCGTTCGAAAATATCTAATTGTTCACCTCAGAACACACACTGGTGAACGTCCCTATGAGTGTAAAGTTTGTCAAAAGAGGTTCACACAACAAGGATCTCTTAATTCGCATAGGAAGTCGCATAACGAGTCGCGACTCGATGGCAATGTTTGTTAA
- Protein Sequence
- MKEGTKRKRGRPVGKKNKSSAREKFKKKPSKVESKVHNTKESKILVDAVKESPEIKKQPEETPTLKRKRGRPPKNSKITSDCIVKSTRGRPHKSSPDHKEKLNPIAKVSENVKPLKKFEEDDSTSEDAASDDSDFLPPLPAQKSAKQKNQYRCRFCNFRTCYKNSYLYHMERYNETPGKFECELCDESFPLKRELHSHWKNHMPTYFPDGPDNPGFYKCDICDERFSKRFQLGKHRQAHRLNFVPEREPRKMKRCRICAKRFYSEVALFKHMEQDTDEHQPVECDLCKKMFRSKRSLVMHLRIHIGPLICHICGSRKYSDASMKVHIRRHNKEYYIHCDVCDKGFYNKSELRLHMISHTNRETNRPFVCQICGRSYRSGCYLKLHVKIAHVEAEEYKRKRYKCDICDFETHLLKCLKIHKQTHTGENLISCQFCNKMINRRSVEVAVDPSGNDLKLETYEIEEETIEVPHEQIIEYTPDETGEIQTEIKMNTLLNHNNIEELLESSSTEADDQAKISKIYECDFCGRKMKKKALFMKHKLRHERKLSRESARCDKCEKDFSDEEKLRKHEIKAHQDEKPHQCSLCGKCFKTEEFLRTHLKQHNKRFVCDVCGISKVSGYDLRLHKKKHNQEFVTHCNICKKGFYTNQTLERHLLTHTGEKPFPCRICNTAYASAAYLNMHMKSHGERQKHKCNLCEFESYWKAALKVHLRIHTGENQISCDICGKSVSSKTYLQIHNRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHRKSHNESRLDGNVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394556;
- 90% Identity
- iTF_01394556;
- 80% Identity
- -