Sito014558.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus itoensis
Gene Symbol
KRBA2
Assembly
GCA_904066005.1
Location
CAJFCP010000035.1:1970473-1973218[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.4e-05 0.006 17.7 5.6 1 23 307 329 307 329 0.98
2 15 6.9e-05 0.0094 17.1 2.7 2 23 335 357 334 357 0.96
3 15 7e-06 0.00095 20.3 1.0 2 23 428 449 427 449 0.97
4 15 4.6e-05 0.0062 17.7 2.2 1 23 455 477 455 477 0.97
5 15 0.00048 0.065 14.5 0.1 2 23 484 505 483 505 0.97
6 15 3.3e-07 4.5e-05 24.4 0.9 1 23 523 545 523 545 0.98
7 15 5.3e-07 7.3e-05 23.8 1.2 1 23 551 573 551 573 0.98
8 15 1.2e-05 0.0016 19.6 1.6 1 23 579 601 579 601 0.97
9 15 0.0008 0.11 13.8 0.2 1 23 607 629 607 629 0.99
10 15 0.00016 0.022 16.0 0.2 3 23 637 658 635 658 0.92
11 15 6.2e-05 0.0084 17.3 1.5 1 23 664 686 664 686 0.98
12 15 0.00039 0.054 14.7 4.7 1 23 692 714 692 714 0.98
13 15 4e-06 0.00054 21.0 0.2 1 23 720 743 720 743 0.96
14 15 1.4e-05 0.0019 19.3 2.1 3 23 751 771 749 771 0.95
15 15 3.4e-06 0.00047 21.2 5.1 1 23 777 799 777 799 0.99

Sequence Information

Coding Sequence
ATGTCAAATGTCAATTCGCAATTTTTTTCGGTTAGACAAGAAAGTGACGATGAAACAGCAAACTCAATAAAGGAGTCTTTCTCACAACTAGAGAATGAAGCGGATGCGCTGAGAATAATTGATCCTCTTTCAAAAGATTCGTCTGAAAGTGAAAACAGAGGACAAATTGATGTGATAGACATGCAGACTGAAGATACATCACCTTACAAATATTTATTTGTCTACGAAGACAGAACATCCAGATATGTTGTACTTAAAGCCATGAAAAGTAATGACTTCAAAGAAATAGCAATGCAACTTCTAGAGGTGTTAACAATCATCGGCATTCCTCGTATTTTACAATCTGGAAATGGTCGAAATTTTACTGAAAAAGTCGTTCAGGAATTGCGTTCATTGTGGGACGGATTTAGTATAATTGCAGCAGACGTTCTAAAATTTTCCTCAAGTGAAAGAAATTTTAAAAGTATTATTAAATCCTGGATGAAAAAACACACAAACAAAACGTGGTTTGAAAGTATTAAGTTTGTTCAGGTTTTACAAAACGCAACCTTTCTTTCCAAGGATGGAAAGTTTCCTTACGAATCCCTTTTTCGTAGAAATGTCTATGAGAATTTTCCTTTTAATTGTAACGAGAAAAGAGATTTTGATTGTGAGGAGTTTAAAGTGGAGAACAAAGATCATGATGATACTTATTCTGTTTCTGATGACGATAATCATGAAGATCATAATCACGATGATAGTGAAATTAGTGAAGAAATATTTCACAAAGAAACTGGTCAAAATAAATCTTCTGTGATTTCTACAAAAACTTTCAAAACTTTGAATTTTTTTACCATAAAAAATGGAGAAGCTCCTGCTGAACATTCGACTTCAGAAAGCGAAGAAACTTCGCCTATAAAATTAAAAGAAAAAAAACCTCACAAATGTAAAATCTGCCCCAAAAAATACACGAAACTAGGACACTTGACGAATCATCTAAAATCGCACAAAGCGAGTAATTTAGAGTGCACAAAATGTTCAAAAAAATTTCGTACTCAGACTCTTTATGAGAATCACATGAGTAAGTCTCATAAGGAACAATCTGAAAATCGCAATAGTAAATTTGGCACAGAAATCGAAGATCCTAATCAAAAAGAGAATCCTGCAAGTACTCGTAACAATCTTCTAGTGAAGGAATCCAAGGAAATATCTTCCGAGAAGGTTTCAAAATCTAAACAACCGACTCTTCGAAAAAGAACAAACCTCCGGGAAAAGCGGCTCAAGTTGAACGGAACCTTGTTAAAATGTAGCTACTGCGACCAAAAATTCGAATTCCCGAGTGTTTTGAAAAGGCACATTCGCTCGCACACGAACGAGAGACCCTATATTTGTAGAGTCTGCAACAAAAGCTTCAAGCAGCTCGGACATCTTAGCCAGCATTCTATAACTCACACAGATTACAGATCTCTGCAATGTGGTCAATGTGGTGTCAAATTTGAGTCACTAGATGCTCTCAAGATTCATTCCCAGACCCACCCGAATGAATCGAATTCAAAGTTAAACCCTAATCTTCCAACGACTCGTCTTTTTGAATGTGACATCTGTAAAAAAGTATTTACCACTAAAAGCGTTTTGGAGAGGCATATCTTCACTCATACACACGAAAGAAACTTTGAATGCGAAGTGTGCGGAAAACGATTCAAGCAATCAGGTCACGTGAAATCTCATATGCTCGTTCACACAGGAGAACGAAAATTCTCCTGCACTATCTGTTCAAAACGTTTTAGTTTGGCAAATTCTTTAAAGAAACATATGTACATTCACAATGGAGACAAACCCTACCAATGTGATGTTTGTGGTGCAAGATTTCTAGAAAAAAGAAATCTGAATGGACATCTAATGACCCACACGAATGAAAAACCATTTGGCTGCAAAATCTGTGGGAAAAGATATACTTTGGCTGATACTTTAAGACGTCACGTGAGTGCAGCTCATGAAGATGGAAGAACATATCAATGTGAACTATGTGCGAAGATGTTTAAGCAACTAGCACATTTATCAGTTCATAAAAAAGTTCATAATGATGAGAGACCTTTCCAATGTCACCTTTGCGAGAAGAACTTTAAGCATAAGAATGTTTTAAAGTCTCATTTGGCAATTCATGCAAATGTTAGACCTTTTGAATGCGATGAATGTAAAGCTACTTTTGTCAGGAAGACGAATTTGCAGACTCATATTGCTTCAGCGCATATGAATGAGAGACCTCACCTCTGTACTATTTGTGGGAAAAAGTTCAAACAAGTCAGTCATCTAAATGGGCACATTATTGTTCACAGCAATTCTATGCCTTATCAGTGTAATTTCTGTGATCGGAGGTGTAACAGGTTGGATAATCTGAAAAAACATATGCGGCTTCACATGAAAGTAAATACAAGTGATACATGTGTTAAAAAGGTCGAGGAAAATATCGTTAGGACTAAAATTATTCCGATGATTCGTAAAGAAGTTCCAGCTGAAGGCTTCCATAATTTTCACAAAAAGATTTAA
Protein Sequence
MSNVNSQFFSVRQESDDETANSIKESFSQLENEADALRIIDPLSKDSSESENRGQIDVIDMQTEDTSPYKYLFVYEDRTSRYVVLKAMKSNDFKEIAMQLLEVLTIIGIPRILQSGNGRNFTEKVVQELRSLWDGFSIIAADVLKFSSSERNFKSIIKSWMKKHTNKTWFESIKFVQVLQNATFLSKDGKFPYESLFRRNVYENFPFNCNEKRDFDCEEFKVENKDHDDTYSVSDDDNHEDHNHDDSEISEEIFHKETGQNKSSVISTKTFKTLNFFTIKNGEAPAEHSTSESEETSPIKLKEKKPHKCKICPKKYTKLGHLTNHLKSHKASNLECTKCSKKFRTQTLYENHMSKSHKEQSENRNSKFGTEIEDPNQKENPASTRNNLLVKESKEISSEKVSKSKQPTLRKRTNLREKRLKLNGTLLKCSYCDQKFEFPSVLKRHIRSHTNERPYICRVCNKSFKQLGHLSQHSITHTDYRSLQCGQCGVKFESLDALKIHSQTHPNESNSKLNPNLPTTRLFECDICKKVFTTKSVLERHIFTHTHERNFECEVCGKRFKQSGHVKSHMLVHTGERKFSCTICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCELCAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPHLCTICGKKFKQVSHLNGHIIVHSNSMPYQCNFCDRRCNRLDNLKKHMRLHMKVNTSDTCVKKVEENIVRTKIIPMIRKEVPAEGFHNFHKKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01392197;
90% Identity
iTF_01390521;
80% Identity
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