Sito004385.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000607.1:3415-24038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00012 0.016 16.4 2.2 1 23 370 392 370 392 0.96 2 18 1.7e-05 0.0023 19.1 1.9 1 20 398 417 398 420 0.94 3 18 2.7e-05 0.0037 18.4 0.7 1 23 426 448 426 448 0.98 4 18 6.7e-05 0.0092 17.2 4.4 1 21 454 474 454 476 0.95 5 18 2.1e-05 0.0028 18.8 4.6 1 23 482 504 482 504 0.99 6 18 2.1e-05 0.0028 18.8 5.3 1 23 510 532 510 532 0.97 7 18 7.9e-06 0.0011 20.1 7.1 1 23 538 560 538 560 0.97 8 18 7.7e-08 1.1e-05 26.4 2.7 1 23 566 588 566 588 0.98 9 18 5.7e-05 0.0078 17.4 6.7 1 23 594 616 594 616 0.97 10 18 1.8e-05 0.0024 19.0 5.8 1 23 622 644 622 644 0.98 11 18 4.7e-07 6.4e-05 23.9 2.9 1 23 650 672 650 672 0.98 12 18 7e-06 0.00095 20.3 7.8 1 23 678 700 678 700 0.98 13 18 2.2e-05 0.003 18.7 9.1 1 23 706 728 706 728 0.98 14 18 2.9e-05 0.0039 18.3 7.5 1 23 734 756 734 756 0.98 15 18 0.0014 0.19 13.0 8.8 1 21 762 782 762 784 0.94 16 18 1.1e-05 0.0014 19.7 0.4 1 23 790 812 790 812 0.98 17 18 0.025 3.4 9.1 4.5 1 23 822 844 822 844 0.98 18 18 4.1e-07 5.6e-05 24.1 1.3 1 23 850 872 850 872 0.97
Sequence Information
- Coding Sequence
- ATGAATAGCGAGCAGCATGCGCTGCCAGCGACTACGCAGGCACAGCAAGAGGAAGTAAATGCAGTTCAAGGCGGTCGCTCGACGTACCCTGGTGGTTTGGCTACTGCGACCAGTCTTGGAAATGTAGGGAATACCCCGCATTCGTCCGCGGACCTGCGTGTAGGTACTGCAGCAGCGTTAGTTTCCTCAGTAGCCAAATATTGGGTCCTCACCAATCTATTTCCTGGACCAATACCCCAGGTCTCAGTTTACCACCATCCCCACCATAACTCCTCGCATAGAGGTAGTGGAGGTGGGGAAGCTCCTTCTAAAGAGTCATCATCCTCACTCAACCAGGAAATGGCCTTGGCCTCCAGTTCCCATCATCAGAACACAGCTTCGCACCATCATCATCAACCTCCTGTTAGTACCAGCAGTCATCACAGTTCGTTGCAGTCTAATACACAGCAGATCCCAAATCAAAATTCCCAGAGAGACGATAAGATTAAGGACGAGAGTGGAAGCTGTACAACTGAACGTTGCAGTGACAATCAGGTACACTGTCAGGTGCAGTGTGATCTTCAGTTGCAAACTCCTCAGGATTTACACCAGAGTTTAATGCAGCAGCAACAACAACAGCAGCAGATTGGCGTCAATATTACTGGTTCTGGAGGTGATAGTGGAAACCAAAATAATTCCGAGAAAAATTCGGACAAAAAGGAGGATATGAGACAACTTAATATGGCGCAGTTCCAAGTTCCAGATTTAAAACCCGGTGGTCACATGATGGATGTGAGAACAGCTGATGGCTCAGTTGTCAAAATCAGTGCTGGAAACGAACAAGACTTGGCTAAAACATTGGGTGTTGAGATGGTACAAAATATGTACAAGGTGAATGTCGAGGACATTAATCAACTCTTAGCCTATCATGAAGTTTTCGGTAAGCTACAGAGTGAAATAGCAGCAGGAACGACCTTAGTTGGGGGAACGGTTCCTACGCAGACAGTTACCACAATCCAAAATGGAACTCCCATAGTGCAACAAGTTCAGCTGAACAAATTCGATATCAAGACGAACGATGGAGAAGCTACACCTGGACCTAGTGCCTCTCCTGTTACAGTGGGAAGCCACAACTGTGATGTTTGTGGAAAGATTTTCCAGTTCCGGTACCAGTTAATTGTACATCGCAGGTATCACACGGAGAGAAAACCATTCACGTGTCAGGTCTGTGGAAAAGCTTTTTCGAACGCAAACGATTTAACTCGCCATGGAAAGTGTCATTTAGGAGGATCTATGTTCACTTGCGCAGTGTGCTTCCACGTTTTTGCCAATGCACCATCTTTGGAACGCCATATGAAACGCCATGCAACTGACAAGCCATACAATTGCACAGTGTGTGGCAAAAGCTTTGCTAGAAAGGAGCATCTGGACAATCACACTCGATGCCACACTGGAGAAACGCCATACAGATGTCAGTATTGTGCGAAGACCTTCACTCGCAAAGAACATATGGTTAATCATGTTCGCAAACACACTGGCGAAACTCCGCATCGATGCGACATCTGCAAAAAGAGCTTTACGCGAAAAGAACACTTTATGAATCATGTGATGTGGCACACTGGAGAAACACCGCATCACTGCCAAGTTTGTGGAAAAAAGTACACTCGTAAGGAACATTTAGCCAATCACATGCGCTCTCATACCAACGACACTCCCTTTCGATGCGAGATTTGTGGTAAGTCGTTTACGAGGAAGGAACACTTCACGAACCACATAATGTGGCATACAGGCGAGACACCACATCGCTGTGACTTCTGTTCAAAGACGTTCACGCGAAAAGAACATCTCCTGAACCACGTTCGACAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAATCACATCCGCCAACACACAGGAGAGACGCCCTTTCGCTGTCAGTACTGTCCAAAAGCTTTTACGCGGAAGGACCATCTAGTGAACCACGTCAGACAGCACACGGGTGAATCACCGCACAAGTGCCAGTATTGCACGAAATCATTCACGCGGAAGGAACACTTGACCAATCACGTGCGTCAACACACAGGCGAGTCACCACATAGGTGCCACTTCTGCTCCAAGTCTTTTACCCGCAAGGAGCACTTGACCAATCATGTTCGCATCCATACTGGTGAATCACCACACAGATGTGAATTCTGTCAGAGGACCTTCACCAGGAAAGAACATCTCAATAATCATCTCCGTCAACATACCGGAGATTCTTCACACTGTTGCAATGTTTGCTCTAAGCCCTTCACTCGAAAGGAACATCTCGTTAATCATATGCGATGTCACACTGGAGAACGTCCCTTCGTGTGCACCGAGTGTGGAAAGAGCTTCCCTCTAAAAGGAAACCTGCTGTTCCACATGCGATCCCACAATAAGGGAAGTAATGCGGAAAGACCTTTCCGCTGCGACCTCTGCCCCAAAGATTTCATGTGCAAAGGTCACTTAGTTTCCCACAGAAGATCTCACTCCGATGAGCGTCCACACAGTTGTCCTGACTGTGGAAAAACCTTCGTTGAGAAGGGAAATATGTTGAGACATTTGAGGAAGCACGCCGCCGAGGGACCACCTACTCAAGTCAGCACCCCCTCGGCAATTCCACAACCAGGAGTGTTGCCTGTTCTTGTTGGACATCCACTGGCGCCACCCGCGCCCTCAGTCGTTCCACAACCTGTCGTTGTACCCACTCCTCCCGGTGTTCTCACCTCTTACTGA
- Protein Sequence
- MNSEQHALPATTQAQQEEVNAVQGGRSTYPGGLATATSLGNVGNTPHSSADLRVGTAAALVSSVAKYWVLTNLFPGPIPQVSVYHHPHHNSSHRGSGGGEAPSKESSSSLNQEMALASSSHHQNTASHHHHQPPVSTSSHHSSLQSNTQQIPNQNSQRDDKIKDESGSCTTERCSDNQVHCQVQCDLQLQTPQDLHQSLMQQQQQQQQIGVNITGSGGDSGNQNNSEKNSDKKEDMRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTNDGEATPGPSASPVTVGSHNCDVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPVLVGHPLAPPAPSVVPQPVVVPTPPGVLTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047431;
- 90% Identity
- -
- 80% Identity
- -