Sito029291.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus itoensis
Gene Symbol
-
Assembly
GCA_904066005.1
Location
CAJFCP010000109.1:839133-842651[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0046 0.63 11.4 1.8 1 20 23 42 23 44 0.96
2 20 0.00056 0.077 14.3 0.3 1 23 51 73 51 73 0.99
3 20 0.28 37 5.8 0.7 3 23 81 101 80 101 0.94
4 20 0.026 3.5 9.0 4.1 1 23 107 129 107 130 0.95
5 20 1.1e-05 0.0015 19.7 0.6 2 23 645 666 644 666 0.97
6 20 4.9e-06 0.00067 20.7 2.2 1 23 672 694 672 694 0.99
7 20 2.6e-05 0.0035 18.5 1.9 1 23 699 721 699 721 0.98
8 20 0.00048 0.066 14.5 0.4 2 23 732 754 731 754 0.96
9 20 3.8e-07 5.2e-05 24.2 0.5 1 23 760 782 760 782 0.99
10 20 8e-06 0.0011 20.1 0.4 1 23 788 810 788 810 0.98
11 20 5e-05 0.0068 17.6 1.0 1 23 830 852 830 853 0.95
12 20 1.7e-06 0.00023 22.2 2.8 1 23 859 881 859 881 0.99
13 20 9.4e-06 0.0013 19.8 1.6 1 23 886 908 886 908 0.97
14 20 7.4e-05 0.01 17.0 1.0 2 23 926 948 925 948 0.93
15 20 0.00042 0.057 14.7 0.2 1 23 954 976 954 976 0.99
16 20 0.0007 0.095 14.0 2.2 1 23 981 1003 981 1003 0.97
17 20 5e-07 6.9e-05 23.9 0.3 2 23 1006 1027 1005 1027 0.98
18 20 0.00025 0.034 15.4 0.2 1 23 1033 1055 1033 1055 0.96
19 20 5.8e-05 0.0078 17.4 1.2 1 23 1062 1084 1062 1084 0.98
20 20 7.1e-06 0.00097 20.2 1.8 1 23 1089 1112 1089 1112 0.95

Sequence Information

Coding Sequence
ATGAATTTACACTTACTTCACCATGTTGAATCTTACATATCTGGTCATAATAGAAAAAACCAAATTTACAAATGTTCGAGGTGTGCAAAAGAATTTTCTAAGGCAGAAAACTTTAAGCTTCATATATTCCACTACTCAGGATTTAAGCCATTTCAATGCGACCTTTGCATGAAGGCTTATGCGACCCTCGATCTTCTAAATGTTCATAAACGCACACATGTAGGAAAACAAATCCGCAACTGTAGATTCTGTGGAAAAGAATTTGTTGGGTTCCGTTTTCTTATGCTTCATGAAAGTATGCACATCAAAGAAAAGCCTTTCAAGTGCAGACTTTGTGAAGAAAGATTTGCAGCTTCGTGTCAATTAAGACGCCACGTTGTTAAACATCACGATCCTACAGAGTATAATGGATGTATGAAAAAGCGTGGTCGACCCGTGAAGAAAAGTCGATCTAGGACGTCTGATCAACCTAAGAAGTATTTTAAACTTACGAAGTGTGATCAACCTGTCAAGTCTAAACCACCTACGAATTATGAACAATTTACGGAGAATGAAGAACCTACGGAGTGTGAACAACCTACGAAGAGTGGAGAATCTACGATGTGTGATCAACCTAACAAGCGTGGCCGACCTAGAAAGTGTCTTCAACCTATCAAGTATGAACAACCTACGAAGCGTGATCGACCTAGGAAGTGTCATCAACCTAAGAAGATTGATCTACTTAAGAAGTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAGCAACCTGTGCAGAGTGATCAAGCAATCAAGATTAATCAATCCACAGAGTCTGAACAATTTATGGCGTGTGATCAACCTATCAAAAGTGAACCACTTACGGAGTATGAACACCTTGCGAAGAATGATGATCAATTCTCGAAGAGTGACCTGTCCACAGAGAGTGATCAATTTAAGATTGATCAACCTATCAAGATTAATCAATCTACGGAGTCTAAGCAGTCTACGATATGTGATCAACCTAGGAAGCGTGGTCGACCTAAGAAGTGTCATCAACTTAAGAAGATTGATCAACTTCAGAAGTGTAATCAATCTAAAAAAATTAATCAACCTGAGAAGTGTGCTCAATCTAAAGAAGTTGATCAACCTATCAAGATTAATCAATCCACAGAGTCTGAACAATTTATGGCATGTGATCAACCTATCAAGAGTGAACCACTTATGGAGTATGAACACTCTGCGAAGAATGATGATCAATCATCGAAGAGTGACCTGCCCACAGAGAGTGATCAATTTAAGATTGATCAACCCATCAAGATTAATCAATCTACGGAGTCTAAGCAGTCTACGATATATGATCAACCTAGGAAGCGTGGTCGACCTAAGAAGTGTCATCAACCTAAGAAGATTGATCAACCTGAGAAGTGTGATCAATCTAAAAAGATTAATCAACCTAAGAAGATTGCTCAGCCTGAGAAGTATGCTCAATCTAAAAAAATTGATCAACCTATCAAGATTAATCAATCCACGGAGTTTGAAAAGTCTACGATATGTGATCAACCTAAGAAACGCGGTCGACCTAAGAAGCGTGGTCAATCTAAGAAGCTTGGTCAACCTAAGAAGATTGATCAACTTCAGAAGTGTGATCAACCTAAAAAGATGGATCAACCTAAGAATATGGATCACCCTAAGAAGATGGATCAATCTAAGAAGGTGGATCAACCTAAGAAGAGTAATCAACCTGAGAAGTGTGAACAACTTGTCAAGTGTGATCAACCCATCAAGTGCGCTCAGCCTAAAAGTATTGATCAACACACAAATAGTGAACAATCCACGAAGAGTGATGAATCCACGAAGACTGATGAATCCACGAAGACTGATGAATCCACGAAGAGTGATGAACTTCCAAAGAGTGAAGTACGTACGAAAAAGGAACTACCCACGACCTGTGAAATTTGCGCAAAAAGTTTTACGAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGCACAAACCGTTTAAATGTGATTTATGTTCAAAGACTTTTCCTAGAAAATGGTGTTTAACAGCACACATAAAAGTTCACGAAGACAAAACTTTCGTATGTGAGATTTGTTCTAAAAGTTTTCGAAGAAAGGACATCCTAAAGAAGCACAAGAAGGTACATGAAAAACCCATAAAGGGTGATCCACATACGCAGTGTAAAATTTGTGGAGTTTATTCTTCGTCGCGTGATACTTTAAGGACTCATATGATAGTAAATCACTCAGAATTAAAACCATTTCAATGTCAAACTTGTGAGAAGAGTTTCCCTAGAAAATGGGCTTTAACAGCGCACATGAAAATTCACGAGGACAAAAAGCCTTTTATTTGTGATGTTTGTTCCAAAGGTTATAGGAGAAAGGCTACTTTAAACGACCACATGAAGGTCCACCTGGTCAAACCTAAGATTTCTAATCAGTCTAAGAATGATCAACCTACATATAATGAATTCAAGTGTGAAATTTGTGGAAAAGCTTATCCGTCACGTCATGGATTATGGGTTCATACAGTAAGTCATCACACCGACGATAAATCCTTTAAATGTAAATTTTGTCCAAAGAGTTATTCTAAAAAATGGCTCTTAACGTCGCATATGAGAATGCACGAAAAAAAGGCTTTTTCGTGTGATATTTGCCCGAAAACTTTTCGAAAAAAGGACTATTTAGAATTACACAAGAAGTTACACAAGGAAAAACGCACAAAATGGGATCAACTTGCAAAGACTGATCCACTTACGAAGTGTAAAATTTGCGGAACATATTATGCGACTCGTAGTAATTTAAAGACTCATACAGTAATGTATCACTCAGATGTTAAACCCTTCAAATGTAAACTTTGTCCGAATAGTTATTCTAGAGAATGGGGATTAGTGTCACACGTGAGAGTGCATCAAGAAAAGGCTTTTGCATGTGATATTTGTTCCAAACGTTATAGAAAAAAGTGCGCTCTGGACTTGCACATGAAGGTACACAGGGACAAGTGTGAAATCTGTGACAAAATATTTATGGATTCAAGTAGCCTTAAATTACATATGCGTATTCATAAAGTTGAAACGGTTTTCGAATGTGATGTCTGTAAGAAAACTTTCAAGACCAGGGAGAGTATTGTAGATCACGTAGCTATTCACTTAGAAAAAGTCCCTTCATTTACTTGTCGAGTGTGTAAAGAAACTTACAAGTCAGCCAACTCTTTAAATACTCATATGAAAGCTCACGCGATTCCTAAGTTCGAATGTAATATTTGCAAAAAGTCTTACTTTAGAAAAAGTGATTTAATGACACATATGTACAATATTCACGTTGAAATTCATTCTCCAAAGTTGGACTGTGATTTAGTTCAAGAGGAGTTGAATTCTGAAAAAATTTCTGAAAGTCGGGGCTTTGATAAGTTTCCTCTGGATGAGGAAATTTGTTATCCATTAGATACAAGTGATATAGAAATTGAAGACATAAAGATAGAACTTAAAATCGAGGATTATTGA
Protein Sequence
MNLHLLHHVESYISGHNRKNQIYKCSRCAKEFSKAENFKLHIFHYSGFKPFQCDLCMKAYATLDLLNVHKRTHVGKQIRNCRFCGKEFVGFRFLMLHESMHIKEKPFKCRLCEERFAASCQLRRHVVKHHDPTEYNGCMKKRGRPVKKSRSRTSDQPKKYFKLTKCDQPVKSKPPTNYEQFTENEEPTECEQPTKSGESTMCDQPNKRGRPRKCLQPIKYEQPTKRDRPRKCHQPKKIDLLKKCDQLIKSEPLTEYEQPVQSDQAIKINQSTESEQFMACDQPIKSEPLTEYEHLAKNDDQFSKSDLSTESDQFKIDQPIKINQSTESKQSTICDQPRKRGRPKKCHQLKKIDQLQKCNQSKKINQPEKCAQSKEVDQPIKINQSTESEQFMACDQPIKSEPLMEYEHSAKNDDQSSKSDLPTESDQFKIDQPIKINQSTESKQSTIYDQPRKRGRPKKCHQPKKIDQPEKCDQSKKINQPKKIAQPEKYAQSKKIDQPIKINQSTEFEKSTICDQPKKRGRPKKRGQSKKLGQPKKIDQLQKCDQPKKMDQPKNMDHPKKMDQSKKVDQPKKSNQPEKCEQLVKCDQPIKCAQPKSIDQHTNSEQSTKSDESTKTDESTKTDESTKSDELPKSEVRTKKELPTTCEICAKSFTKRSYLMIHMISHSEHKPFKCDLCSKTFPRKWCLTAHIKVHEDKTFVCEICSKSFRRKDILKKHKKVHEKPIKGDPHTQCKICGVYSSSRDTLRTHMIVNHSELKPFQCQTCEKSFPRKWALTAHMKIHEDKKPFICDVCSKGYRRKATLNDHMKVHLVKPKISNQSKNDQPTYNEFKCEICGKAYPSRHGLWVHTVSHHTDDKSFKCKFCPKSYSKKWLLTSHMRMHEKKAFSCDICPKTFRKKDYLELHKKLHKEKRTKWDQLAKTDPLTKCKICGTYYATRSNLKTHTVMYHSDVKPFKCKLCPNSYSREWGLVSHVRVHQEKAFACDICSKRYRKKCALDLHMKVHRDKCEICDKIFMDSSSLKLHMRIHKVETVFECDVCKKTFKTRESIVDHVAIHLEKVPSFTCRVCKETYKSANSLNTHMKAHAIPKFECNICKKSYFRKSDLMTHMYNIHVEIHSPKLDCDLVQEELNSEKISESRGFDKFPLDEEICYPLDTSDIEIEDIKIELKIEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-