Sito022422.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010025678.1:31578-32516[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-08 7.4e-05 23.2 0.0 4 38 17 51 16 54 0.94 2 2 2.2 2.3e+03 -0.8 0.1 22 28 95 101 92 103 0.76
Sequence Information
- Coding Sequence
- ATGCGCACATACAAAAGAACATCCGAAAGAGGCAAAACACCTGGCAGCGAAATTTTACGAGCGATTGAAAAAATTATCAACGAAAAACTGCCAGTGTATCGCGTCGCAAAGGAATTTAACATCCCGGTTCGGACCTTGGATAGACACTACAAAAAACTTGCTGGAAAAGATGATTCTGCTGGGAATGACGAAATAAAAAATCTGCGTATTGGATATCAAAAACACAGACAAGTTTTCACGAATGAGCAGGAGAACTGTTTGGTTCATTACTTGAAAAGAGCTGCAGCAATATATTACGGTCTATCTCCGAAAGAAGTTCGTCAACTCGCATTTCAGTATGGAAAAAAAATGGGAATTCCAAATGCCGGAATCATGGAGCGACAAATCGATGGCAGGCTCGGATTGGTTTACCTCTTTTTTGAAACGGAACCAAGATTTATCCATTAG
- Protein Sequence
- MRTYKRTSERGKTPGSEILRAIEKIINEKLPVYRVAKEFNIPVRTLDRHYKKLAGKDDSAGNDEIKNLRIGYQKHRQVFTNEQENCLVHYLKRAAAIYYGLSPKEVRQLAFQYGKKMGIPNAGIMERQIDGRLGLVYLFFETEPRFIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391029;
- 90% Identity
- -
- 80% Identity
- -