Sito016117.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000088.1:71463-72564[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-11 3.5e-08 33.8 0.1 6 40 41 74 36 78 0.89 2 2 0.27 3e+02 2.0 0.0 24 41 71 89 71 91 0.66
Sequence Information
- Coding Sequence
- ATGTACTCATGGGCTTCAAATCTTCGAAAACATCTGAAAATTGGTTGCGGATTAGTTACCAAGATTTACTATCCGAGGTCAAGAAGAAAATATACGATGAAAAAATCTGAAGATGTGGTAAAACTTGCAATGGAAGCTGTTGCAAATGGAATGTCGTTGAGAAAAGCAGAAGTCCTTTTTTCTATTTCAAAATCTGTACTTCATCGATATAAGAAGTACGGAATACCTATGAATATAAGCAAACAACGAGTTTACGAGAGAAACTATGATGAAGTATACGATACAGTGGCTTCAAGTGACTTCACTCATTAA
- Protein Sequence
- MYSWASNLRKHLKIGCGLVTKIYYPRSRRKYTMKKSEDVVKLAMEAVANGMSLRKAEVLFSISKSVLHRYKKYGIPMNISKQRVYERNYDEVYDTVASSDFTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -