Sito012111.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010026076.1:314057-315606[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-11 3.2e-08 33.9 0.0 3 40 17 53 15 57 0.90 2 2 5.8e-05 0.063 13.8 0.0 23 44 312 333 292 334 0.76
Sequence Information
- Coding Sequence
- ATGACGCGTAAGAGGAAGCGCACCTCGAACATTGCGAGATGGTCCAGTGATGACTTGCAAGCAGCATTAAAAGCCGTAAAAGAAGGGAAACCAATGACACAAGCGTCCGCTTTATACGGAGTTCCTCGCACAACAATTTATAGAAGATTGAAGCGCAATAAATTTTCCGCCCCAAAAATGGGTCGCAAGGCTGTCTTCTCCACCGAACAAGAGGAAATTCTAACCAACCATATAAACAAATTACAATGCACAAGTCCCTTGAACTCCCAAAAAGTTCGAAAGCTAGCTTTCGATCTCGCTGAAAAATTACAACTTGATCACAATTTTAATAGAGAGAAACAGGAAGCTGGACAAGAGTGGCTTGCATCTTTCCTGAAACGGAACCCTCGTGCTCAGATTATTAGACGAGGAGAGAGAAGCCACGAGGCGAACGAACTAAACAACAAAAATCCAAATTTCGATGAAAAACCCTTTACTGAGACTGAGACTGAAATTAAGAATGAATCGATATTTCTGAAGGTGGAAATGGATTTTTTGGATGACTCAGAACCTCTCAATTCTTCTACTGATCCTTTGGAGAATATTTCTGAGGGTTTTGAGAGCAGCCGATGCTTAGAGAATTTAACGAGTGTCGAAGAAACTGAGGAGGAAGTTAAGAGGAAGTTTGAAATGAAGTTGAGAGTGAGGAAAAAGATTCTCTCAAAAGAGGAGAGACGTACTTTACAAAGTTGCGTTGATAAACCAATGAGGATAGTGGATAGAAGTACTTTTCTTGATCAACTCAAGAAGTCGAATCAGGTTGTGATTGAAAAGGAAGATGATTCACCCGCATTGAAGAACCGTGGAAAGCGAACGGCAAAAGCGTCCTGGACAGCCAATGATTTGAACTCTGCTCTCCAAGAGTTAGCACAAGGAAAAACTATGACAGCAGTTTCAGCTTTATATGGCGTTCCCCGTACTTCAATTTACAGAAGACTGAGGCAGAACAACTTTTCTTCTCCAAAGCTCGGTCGAAATTCAGTCTTCACACCTAAACAAGAAGAATGTCTCACTGATTACATTTTAAACGTCGCGAAATTTTGTCCCATGAAAACGACACAATTAAGGAGAATGGCTTTCGAATTAGCTGAGAAGTTGAATCTGGACCACAATTTTAACCGAGAAATAAGACTTGCTGGAAAGGATTGGTTGACGGGTTTTATTAAGAGAAATCCTAGGGCGAATTTTAACGGCAAAAGAAATTTATGTGAAACGGGCAATTACCAAAACGGGAAAAAGGAGTTCTTCTATGATTTTAATGATTTAGTTAAATCTTTTCCATCCCTCGAATGTCAGACTGTTGATGTTTAA
- Protein Sequence
- MTRKRKRTSNIARWSSDDLQAALKAVKEGKPMTQASALYGVPRTTIYRRLKRNKFSAPKMGRKAVFSTEQEEILTNHINKLQCTSPLNSQKVRKLAFDLAEKLQLDHNFNREKQEAGQEWLASFLKRNPRAQIIRRGERSHEANELNNKNPNFDEKPFTETETEIKNESIFLKVEMDFLDDSEPLNSSTDPLENISEGFESSRCLENLTSVEETEEEVKRKFEMKLRVRKKILSKEERRTLQSCVDKPMRIVDRSTFLDQLKKSNQVVIEKEDDSPALKNRGKRTAKASWTANDLNSALQELAQGKTMTAVSALYGVPRTSIYRRLRQNNFSSPKLGRNSVFTPKQEECLTDYILNVAKFCPMKTTQLRRMAFELAEKLNLDHNFNREIRLAGKDWLTGFIKRNPRANFNGKRNLCETGNYQNGKKEFFYDFNDLVKSFPSLECQTVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394198;
- 90% Identity
- iTF_01394198;
- 80% Identity
- -