Basic Information

Insect: Synergus gifuensis
Gene Symbol: ush
Assembly: GCA_904066015.1
Location: CAJFCO010000030.1:5682837-5686913[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0096 1.3 10.4 0.3 3 21 271 289 269 294 0.88

2 8 4e-05 0.0055 17.9 1.3 1 23 321 343 321 343 0.98

3 8 0.091 13 7.3 1.6 3 20 382 399 381 401 0.93

4 8 0.014 1.9 9.9 4.4 2 21 608 627 607 628 0.94

5 8 0.052 7.2 8.1 0.0 3 20 655 672 653 674 0.91

6 8 0.099 14 7.2 0.0 2 23 713 734 712 734 0.94

7 8 0.0084 1.2 10.6 1.4 1 23 740 762 740 762 0.99

8 8 0.041 5.6 8.4 0.5 3 21 860 878 859 879 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0096	1.3	10.4	0.3	3	21	271	289	269	294	0.88
2	8	4e-05	0.0055	17.9	1.3	1	23	321	343	321	343	0.98
3	8	0.091	13	7.3	1.6	3	20	382	399	381	401	0.93
4	8	0.014	1.9	9.9	4.4	2	21	608	627	607	628	0.94
5	8	0.052	7.2	8.1	0.0	3	20	655	672	653	674	0.91
6	8	0.099	14	7.2	0.0	2	23	713	734	712	734	0.94
7	8	0.0084	1.2	10.6	1.4	1	23	740	762	740	762	0.99
8	8	0.041	5.6	8.4	0.5	3	21	860	878	859	879	0.92

Sequence Information

Coding Sequence: ATGATGGTCGTCTCCAGTAAATGCAATTGGCGAACTTTCAATTTCAAATGTACTATATTTTTACTACAATTGATTGCCAGGGAGGATGAGGAGTGGAGTGACTCGGAAAAGACACCGTCCGTGAACAGCGGAGCGGAGGGTTGTGGATCCGCGGTTTCAAGTCCTTCAGCATCAGCCGTTGAAGAGGAGTCAAGTTTGCCACCCCCACCAAGACTCAACTCGATATCTGTGATATCCCCGAATTCCGTTGCTGAGGATATCCGGTTACGATTGAGCGTACTTTCCGAAGATGCGAGAAAACGACTCTCTAGTTTTACCGAGGATATCGAGGCTTCGAGAGGATCGAGAGAAAGGCATTCTTCGACAAGAACAACATCGACTCAAGAGTCGAGTCCGAAGGCATCACGAATCGACGTCGACGAGGATTCGAATATGGTTGTCAAAGACTCGGAGGATTGTGGTGGTAGACCCTCGTCTTCGTCATCCTCAACGCGACGAAGAGATACTAGAAGAGATTCCGAAGACTCTCGACGATCAGATGACGCATCCTGCGATACAAAAAAGGCGAGGCTAGATGATGATACCACGCCGAGATTGAGACTGAATGCTAGTCTGGCAACGGATCCTGCTCTCCGGCCAGCTACCGTTGCCGCCCTCACTATCAAACCCGAAAACGTCTCTCCACCAAATCAAACACCACCTCTTCCTGCTGGCCTCCAAAACGCGATAGCCTCTGGTAGACTCTTCGTGCTGCCAACCGACGGAAAGGAGACGATAACAGTAGAGGCATCGCGGCCAGCTCCACTAATTTGTCGTCCCTGTGGGATTAGATTTAGTTCGGCAAGTACTTTGGAAGCTCACCAGACCGTTTACTGCGCCCACAGGCCACGACTCGAGGAAGATGGGGCGAACAATGACGACGATGACGAAAAGAATGGCAAATTCGACGTTCGCAAGGCCTATGCTTGCCCTCACTGTTCTTATAGTGCTGATAAAAAGGTTTCACTCAATCGACACATGCGGATGCATGCTGCCTCGCCTGTGCCACCTTCGGTACCACCAGCTCCAACAACCGCAGTAGGAAATTCTGGAAGCGTCACTCCTACGGTGAATGGATCGCTGAATGAAGAGGCTGAAAGATACTGTCGGAATTGTGACATCAGGTTTAGTTCCTTGAAGACCTACCGAGCACACAAGACTCATTATTGTAGTACTAGACACGTAGTGAAAGACGTTCAACCAGCTCCCGCATTTGTGAAAGCCTCGCCGCCGATAAGTTCGAGTCCTGGTGATTCGCCACCACCTCAACCGTGTTTAGCCCTGCCAACGAATCCCATTCTTATCGTTCCTTATTCTCTCTTCCGGGGCGCCAGTGTGCTAGCAGCACCAACTCTTCCTGCTCCAGACACCGCGTGCTTCCTTTTGCCAAATGGTTCCCTGCAGCCAATGACGAGGGGCATTTCCACTACACAGAACACCGTCACTGAGGCTCCCTCGGTTCTCAGGGCTGCCAACAAACCTTCAACGCCATCCTCCGGTGGTAATACCTCCACTTCACCTTCCGCTCCAGCCTCGGCACCACTCGATCTCAGCATCAGGCGTTCGCCTGTTCACCAGGACGAAAAGGAGAATAGGGTCTCCCCAGTTCCGTCGTCCTTACCGCCTCCTCCAGGAAGTCCCAGATCCAGAGGCAGCAGTAGTCCCAGAGCGAGGTCTCAAACTGGAACTTCTGCTCCTTCGGCACCCACGGAACTAGCACTCAGATTGGCTGAACTGCCTCCACCTCCAGTTCCTGGAGTTCTTGTTAAGCAAGGCGTCTCTAGGTGTAAAGAGTGCAACATCGTTTTCTGTCGACATGAAAATTTCGTCGCTCATAAGAAACACTACTGTCAAGCACGAGAAAGTACAATAAGCAGTCCACCGCCACCTGGTACACCTTCACCTCCTCTCGTTCAACTGATATGCGCCGCTTGTGGCATTAAATTCGCTTCCATGGATAATCTCGCAGCCCATCAGACCTTTTACTGTCCTAAGAGACCCGAACCTCAAGAACATCATACTCGATGTCACAAATGCAAGGCGATAATCGAAGCCGGAAGTACGCACACTTGTACAAGTAGTTCGACAGGTGGATGGCGGTGTCCAGTTTGTGGTGCAGTGAGTCCAACAGCTTTAGCAGCTCAGCGTCACATGGATGCTCATCAAGGTGTTAAAGCTTTTAGGTGTACGATTTGCCGTTACAAAGGAAACACCCTTCGTGGTATGAGGACACATATCAGAATGCATTTTGAAAAGCGCGGCACAGATCTGCAGGAGGAAAATTATATAACATGTGTGCTCGATGATGAAACGACGACACCAACGCCCGAACCAACTCCGGCCGTGACACCTGAAGAGGTTCCAGCCGAGACTCATGTCAATGGGAAATCAGAAAGAAAAAGTAGTCCTCAACCACAGAATCCATCTCAACCTCCTGCCTCTCAAACTCCGACTGGCACCGGAAAAGTCAAACAAGAACGGGAGGACACACCACCACCCGAAGAGAGTCTCGATCCTAGCAAAACTGGCCCTCGATACTGTCGATCTTGCGATATTAGCTTTACCTACCTAAGCACATTCATCGCGCATAAAAAATTCTACTGTTCTAGCCACGCCGGTGAGGCTAGTAACAACAACAATAATAACAATAATAACTCCAGCAGCCATACCACTACACCGCCAAGCGGTAGGACGGAGGCTCCTGTACTGTAG
Protein Sequence: MMVVSSKCNWRTFNFKCTIFLLQLIAREDEEWSDSEKTPSVNSGAEGCGSAVSSPSASAVEEESSLPPPPRLNSISVISPNSVAEDIRLRLSVLSEDARKRLSSFTEDIEASRGSRERHSSTRTTSTQESSPKASRIDVDEDSNMVVKDSEDCGGRPSSSSSSTRRRDTRRDSEDSRRSDDASCDTKKARLDDDTTPRLRLNASLATDPALRPATVAALTIKPENVSPPNQTPPLPAGLQNAIASGRLFVLPTDGKETITVEASRPAPLICRPCGIRFSSASTLEAHQTVYCAHRPRLEEDGANNDDDDEKNGKFDVRKAYACPHCSYSADKKVSLNRHMRMHAASPVPPSVPPAPTTAVGNSGSVTPTVNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDVQPAPAFVKASPPISSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGSLQPMTRGISTTQNTVTEAPSVLRAANKPSTPSSGGNTSTSPSAPASAPLDLSIRRSPVHQDEKENRVSPVPSSLPPPPGSPRSRGSSSPRARSQTGTSAPSAPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESTISSPPPPGTPSPPLVQLICAACGIKFASMDNLAAHQTFYCPKRPEPQEHHTRCHKCKAIIEAGSTHTCTSSSTGGWRCPVCGAVSPTALAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDETTTPTPEPTPAVTPEEVPAETHVNGKSERKSSPQPQNPSQPPASQTPTGTGKVKQEREDTPPPEESLDPSKTGPRYCRSCDISFTYLSTFIAHKKFYCSSHAGEASNNNNNNNNNSSSHTTTPPSGRTEAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01391534;
90% Identity: iTF_00461133;
80% Identity: -