Sgif020805.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000046.1:4087103-4089940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.047 6.5 8.2 0.5 2 23 108 130 107 130 0.81 2 16 0.0002 0.028 15.7 4.4 1 23 136 159 136 159 0.93 3 16 0.1 14 7.2 5.4 1 23 165 188 165 188 0.94 4 16 1.2e-05 0.0016 19.6 1.7 1 23 194 216 194 216 0.98 5 16 1.8 2.5e+02 3.2 1.6 2 23 222 244 221 244 0.82 6 16 0.003 0.41 12.0 0.7 1 23 251 273 251 273 0.97 7 16 1.1e-06 0.00016 22.7 0.4 1 23 277 299 277 299 0.98 8 16 0.00014 0.019 16.2 0.5 1 23 424 447 424 447 0.94 9 16 0.0004 0.055 14.7 3.2 1 23 453 475 453 475 0.98 10 16 0.011 1.5 10.2 6.5 1 23 484 507 484 507 0.95 11 16 0.00078 0.11 13.8 1.2 1 23 513 535 513 535 0.95 12 16 2.6e-05 0.0036 18.5 2.1 1 23 540 563 540 563 0.96 13 16 0.012 1.7 10.1 1.9 1 23 569 591 569 591 0.97 14 16 4.9e-06 0.00067 20.7 0.5 1 23 595 617 595 617 0.98 15 16 0.0025 0.35 12.2 7.7 1 23 623 645 623 645 0.98 16 16 0.00014 0.02 16.1 2.4 1 23 651 673 651 673 0.97
Sequence Information
- Coding Sequence
- ATGATATTTTTCACAGTAAACTCAAATTTTGCCTTTGGTATCAAAAAGAAGATTGATTTTCCCTCAAGTTACTATTCTGAACATTACATAACAAATTTATTTTTATTGTTTAGGAGACAACGTTCCAAAGTGGAAGAACGTGACTGCTTGAGAATAAGAACTGTCTACAATTCCCTATTGAAATCCAAAGTTAGATCTCTCCAAAAACCAGTGAGACAACCGGCAAAAATATCAAGTTCGAAAGGTAAAAAAATTATCGAACAAGAGGATACAAGAGATTATGATAAGCTGAGTGAGGAAATAAAAGCAAAAAAGAGAGTTAAATGTGAAATTTGTGATATTACTTTTCCTACGAATGGTTCTGAATACAAGAGACATTTGGTTAAACATAGTAATATCTACCCTTATCAGTGCAAACTCTGCTTCAAGAAATTCAAACATCTCCCAAATTTGAAGAGACACGAAGTTAGAAATCATGGCGAGGCTCCTGTCTACAACTGTAAACATTGCGAGTTTACAACTGTTCACAGTGCCTATTTACAGGTACACTTTACACGAAAACACACAGGTAACTTTCAATTTTCCTGTGATCAGTGTGATCGTAAATTTCGTATAAAAGCGGATTACAAGAAACATATGATTACTCATGACGGAAGTCCTTGCACGTGTGAAGTTTGTGGTGTTTCTTTACCTAATAAAATGTCTTTATACTTCCACAAGAACTACAATCACAAGGAAAAGGAAAGCAAATTTCCTTGTCCACTTTGTAAGAGAAAACTTCAGTCGCAGAAAAATCTGGACAACCACGTTCAGCAACACAAACAGAAATATATGTGTGAGAAGTGTGGATTGGAACTTACGAGAAAAGCAGCTTTGAAGAGGCACATTAGAACGCACTCGGGTGAAAAGCCGAAATCAACAGTACGCTTAATCAAGAACCAGTCTATCGAGAAATCTGGAGACAAGCAGAAATTATCAAAAAACAATCGTGTCACTAAAGATCCAAGAATTCAAAACGAAAGAAAATCCAGTCTGGATCAGACAAAGCAATCTCGTAAAGAGCTTCAAGAGAACTTGAAAATGAAAAGACAAAGAAACAAAACTGCCAAAGGAACTTTACCAAAACTAATAAATATTGCAATTAAAAAAGATAAAACCCTCACTTTACCAGAAAAAGAAATTAAAAATCTTGATCTGGATGATGATAAAAATGCAAGCGAAGAAGGAATTAAGCAAGATGTTCTTTACAAAAGATTAAACGACGGTAATTACACTTGTGATATTTGTCAGATGACTTTTGAACAGAAAAGTAAGATTTTGCGTCATATCATTGGCAAGCACAGTTTTCACCGGCCTTTTAAATGTTCCTCTTGTGCGAAAGCTTTTAAATACAAGTGTGACCTCAAAGCTCATCGCTTAGTACACCAAGAAATTGATTCAAGTTTGCTTCATTATTGTGACAAATGCGAATACAGAACAAAGACAAAAAACAATCTTAAGACTCATTACACTCGGAAGCACACAGACGATTATAGATTCGCTTGTGAGCATTGTGGAAAACGATTCAAAATGGAATGGGACCTCAAATTTCATATTGGAACCCATGGAAGCTCCCAGCACATGTGTGACGTGTGCGGTAGATTTTATACTAGTAATTATTCCCTTTCTAAGCATCGCAAGGTGGCTCATCTAAACGAGTACAAGTTCCATTGCTCGGTTTGCAATAAAAGACTGCTTACACAGGAAAATCTGGATAATCATATGCTGCAACATAACAGAACCTACGAGTGTATGGAATGTGGGAAGACTTTTGCTTCGAAGAGATATCTTGCTACCCATGCGACAACACACACGGGGATTAAACCTTACACCTGTCATTTGTGTGAGAAAACCTTTAGGACTTCTCATATGCGAAATACGCATCTCTTCACTCATTCGTCGGAACGACCTCATATTTGTGATTTGTGCGGTCAAGCTTTCAAGAGACGATATTATATGATTGAGCATAGGAAAAAACATCCGGATGCTCATCTCTCTTCGCCTCCTCTTCCTTTGGGTGGGCAAAAACACCACTCCTAA
- Protein Sequence
- MIFFTVNSNFAFGIKKKIDFPSSYYSEHYITNLFLLFRRQRSKVEERDCLRIRTVYNSLLKSKVRSLQKPVRQPAKISSSKGKKIIEQEDTRDYDKLSEEIKAKKRVKCEICDITFPTNGSEYKRHLVKHSNIYPYQCKLCFKKFKHLPNLKRHEVRNHGEAPVYNCKHCEFTTVHSAYLQVHFTRKHTGNFQFSCDQCDRKFRIKADYKKHMITHDGSPCTCEVCGVSLPNKMSLYFHKNYNHKEKESKFPCPLCKRKLQSQKNLDNHVQQHKQKYMCEKCGLELTRKAALKRHIRTHSGEKPKSTVRLIKNQSIEKSGDKQKLSKNNRVTKDPRIQNERKSSLDQTKQSRKELQENLKMKRQRNKTAKGTLPKLINIAIKKDKTLTLPEKEIKNLDLDDDKNASEEGIKQDVLYKRLNDGNYTCDICQMTFEQKSKILRHIIGKHSFHRPFKCSSCAKAFKYKCDLKAHRLVHQEIDSSLLHYCDKCEYRTKTKNNLKTHYTRKHTDDYRFACEHCGKRFKMEWDLKFHIGTHGSSQHMCDVCGRFYTSNYSLSKHRKVAHLNEYKFHCSVCNKRLLTQENLDNHMLQHNRTYECMECGKTFASKRYLATHATTHTGIKPYTCHLCEKTFRTSHMRNTHLFTHSSERPHICDLCGQAFKRRYYMIEHRKKHPDAHLSSPPLPLGGQKHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389653;
- 90% Identity
- -
- 80% Identity
- -